[GTOP] [HELP] [ORGANISMS] [SEARCH] [SUMMARY]
Francisella tularensis subsp. mediasiatica FSC147 (ftul2)
Gene : capB
DDBJ      :capB         capsule biosynthesis protein CapB
Swiss-Prot:             

Homologs  Archaea  2/68 : Bacteria  35/915 : Eukaryota  0/199 : Viruses  0/175   --->[See Alignment]
c.72.2
:405 amino acids
:SECSTR
:PSIPRED
:BLT:PDB   31->158 1w7kA PDBj 5e-05 26.6 %
:RPS:PDB   38->379 2am1A PDBj 2e-16 13.0 %
:RPS:SCOP  38->161 1e8cA3  c.72.2.1 * 6e-11 23.5 %
:HMM:SCOP  38->257 2gc6A2 c.72.2.2 * 6.6e-12 22.9 %
:HMM:PFM   41->154 PF08245 * Mur_ligase_M 9e-11 31.5 89/188  
:BLT:SWISS 7->393 CAPB_BACAN 1e-58 36.8 %
:TM
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID ACD30942.1 GT:GENE capB GT:PRODUCT capsule biosynthesis protein CapB GT:DATABASE GIB00719CH01 GT:ORG ftul2 GB:ACCESSION GIB00719CH01 GB:LOCATION complement(1109683..1110900) GB:FROM 1109683 GB:TO 1110900 GB:DIRECTION - GB:GENE capB GB:PRODUCT capsule biosynthesis protein CapB GB:PROTEIN_ID ACD30942.1 GB:DB_XREF GI:187712645 GB:GENE:GENE capB LENGTH 405 SQ:AASEQ MTTLDFWLIVVVFVILCVYLIIENIVHNNSIKSIPIRIHVNGTRGKSSVARLIAAGVRAGGYRTVAKTTGTLARYIDVDGSETPVFRIGFSNIAEQVKIMFKARRAKADAIVIECMALQPLLQSLCELKLIKATHGVLTNARPDHLDVMGPTERDVAKALAATVPIGAKYFTAEDIHLDFFEYACKDRGSELIAATAQDAEKISDEEINKFVYSEFKINVALALKVTDDLGIPREIALKGMWEATPDPGAMTEYNFNIKNAEINFANAFAANDPVSTKMLWDKLCAKYSGCDKKVLVVNCRDDREDRSKQMAEAALGWQKQDLIVLIGTGTEVFTSFYKKYAKSLNKPMTKVIVCEEMTPIQILEKTVDSNPANSYILVGVGNIKDIGMELVDYCDTSHKKKHNL GT:EXON 1|1-405:0| BL:SWS:NREP 1 BL:SWS:REP 7->393|CAPB_BACAN|1e-58|36.8|378/464| TM:NTM 1 TM:REGION 4->26| SEG 255->272|nfniknaeinfanafaan| BL:PDB:NREP 1 BL:PDB:REP 31->158|1w7kA|5e-05|26.6|124/410| RP:PDB:NREP 1 RP:PDB:REP 38->379|2am1A|2e-16|13.0|307/442| HM:PFM:NREP 1 HM:PFM:REP 41->154|PF08245|9e-11|31.5|89/188|Mur_ligase_M| RP:SCP:NREP 1 RP:SCP:REP 38->161|1e8cA3|6e-11|23.5|115/234|c.72.2.1| HM:SCP:REP 38->257|2gc6A2|6.6e-12|22.9|205/0|c.72.2.2|1/1|MurD-like peptide ligases, catalytic domain| OP:NHOMO 38 OP:NHOMOORG 37 OP:PATTERN ----------------------------1-2------------------------------------- ------------1------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1-1-11----1-------1111-------1--------------------------1111-------------------------------------------------------------------------------------------------------11-------------1---1--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1------------------------------------1------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------111111111---------------------------------11--11------------------------------------------1------ ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 370 STR:RPRED 91.4 SQ:SECSTR ##############################cccccEEEEEEcccccccHHHHHHHHTTTccEEEccccccEETTcccETTEEccccccccTTcccTTHHHHHHTcTTccEEEEEccccTTHHHHHHTTHHHcccEEEEccccccccTTccccHHHHHHHHGGGTTcTTcEEEEEcGGGGGcccccEEEEEcTTccccEEEEEEcccEEEEccccHHHHHHHHHHHHHHHTTccHHHHHHHGGGcccccccccEEcTTcccTTTcEEEEEcccccHHHHHHHHHHTTcccccccEEEEEEEcccccTTHHHGGGccTHHTTccEEEEEEcTTHHHHHHHHHccTTcEEEEEccccccTHH##HHHHHHHHHccTTEEEEEccTTcEEETTEEEEccHHHHHHH### PSIPRED cccHHHHHHHHHHHHHHHHHHHHHcccHHHHHccccEEEEEccccHHHHHHHHHHHHHHccccEEEEEcccEEEEEEEccccccHHHcccccHHHHHHHHHHHHHccccEEEEEEEccccccEEEEEcccccccEEEEccccHHHHHHHcccHHHHHHHHHHHcccccEEEEcccHHHHHHHHHHHHcccEEEEEcHHHcccccHHHHcccccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHcccccEEEEEEEEcccccEEEEEccccccHHHHHHHHHHHHHHcccccEEEEEEcccccccHHHHHHHHHHHccccccEEEEEccccHHHHHHHHHHHHHccccccEEEEEccccHHHHHHHHHHccccccEEEEEEcccccccHHHHHHHHHHHHHHHcc //