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Francisella tularensis subsp. mediasiatica FSC147 (ftul2)
Gene : dnaN
DDBJ      :dnaN         DNA polymerase III, beta subunit
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  886/915 : Eukaryota  1/199 : Viruses  0/175   --->[See Alignment]
d.131.1
:367 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   1->367 1mmiA PDBj 2e-66 34.6 %
:RPS:PDB   1->366 2awaB PDBj 3e-74 21.2 %
:RPS:SCOP  1->119 1jqjA1  d.131.1.1 * 3e-25 28.6 %
:RPS:SCOP  123->246 1vpkA2  d.131.1.1 * 2e-29 26.4 %
:RPS:SCOP  247->367 1vpkA3  d.131.1.1 * 4e-30 23.1 %
:HMM:SCOP  1->116 1vpkA2 d.131.1.1 * 4.8e-23 25.9 %
:HMM:SCOP  126->246 1vpkA2 d.131.1.1 * 2.8e-25 32.2 %
:HMM:SCOP  247->367 2polA3 d.131.1.1 * 4e-33 38.8 %
:RPS:PFM   1->116 PF00712 * DNA_pol3_beta 1e-15 34.8 %
:RPS:PFM   139->245 PF02767 * DNA_pol3_beta_2 2e-16 35.8 %
:RPS:PFM   247->366 PF02768 * DNA_pol3_beta_3 1e-20 40.0 %
:HMM:PFM   130->245 PF02767 * DNA_pol3_beta_2 3.5e-35 35.7 115/116  
:HMM:PFM   1->118 PF00712 * DNA_pol3_beta 7.6e-28 33.9 118/120  
:HMM:PFM   247->365 PF02768 * DNA_pol3_beta_3 6.5e-32 34.5 119/121  
:BLT:SWISS 1->367 DPO3B_VIBCH 2e-70 34.4 %

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID ACD30121.1 GT:GENE dnaN GT:PRODUCT DNA polymerase III, beta subunit GT:DATABASE GIB00719CH01 GT:ORG ftul2 GB:ACCESSION GIB00719CH01 GB:LOCATION 1558..2661 GB:FROM 1558 GB:TO 2661 GB:DIRECTION + GB:GENE dnaN GB:PRODUCT DNA polymerase III, beta subunit GB:PROTEIN_ID ACD30121.1 GB:DB_XREF GI:187711824 GB:GENE:GENE dnaN LENGTH 367 SQ:AASEQ MNFVLNRDDLLKPLQSMLSVANSKSTMPLLSCILFDIDNNNLKITASDLDTEISCNIAVSCNTTIKLALNADKIYNIVRSLNENSMIDFRINENKVTIVSNNSTFNLISLNADNYPLIDSNINEQASFDLSQQDFHHIISKVDFSMANDDTRYFLNGMFWEINANLLRAVSTDGHRMSITEAIIDSKVLDSASKSIIPKKAILELKKIVGKTEENIKICLGKNYLKAIFGNYAFISKLIDGRYPDYQKVIPKNNTKLLAVDKQFFKNSLLRTSILANDKYKGVRLNISQNQLLLSANNPDNEKAEDKIEVQYNDQPMEICFNYKYLLDIINVLSEETMSIYLDNPNMSALVKDEKDNSLFIIMPMKI GT:EXON 1|1-367:0| BL:SWS:NREP 1 BL:SWS:REP 1->367|DPO3B_VIBCH|2e-70|34.4|363/366| BL:PDB:NREP 1 BL:PDB:REP 1->367|1mmiA|2e-66|34.6|364/366| RP:PDB:NREP 1 RP:PDB:REP 1->366|2awaB|3e-74|21.2|363/375| RP:PFM:NREP 3 RP:PFM:REP 1->116|PF00712|1e-15|34.8|115/119|DNA_pol3_beta| RP:PFM:REP 139->245|PF02767|2e-16|35.8|106/116|DNA_pol3_beta_2| RP:PFM:REP 247->366|PF02768|1e-20|40.0|120/121|DNA_pol3_beta_3| HM:PFM:NREP 3 HM:PFM:REP 130->245|PF02767|3.5e-35|35.7|115/116|DNA_pol3_beta_2| HM:PFM:REP 1->118|PF00712|7.6e-28|33.9|118/120|DNA_pol3_beta| HM:PFM:REP 247->365|PF02768|6.5e-32|34.5|119/121|DNA_pol3_beta_3| GO:PFM:NREP 15 GO:PFM GO:0003677|"GO:DNA binding"|PF00712|IPR001001| GO:PFM GO:0003887|"GO:DNA-directed DNA polymerase activity"|PF00712|IPR001001| GO:PFM GO:0006260|"GO:DNA replication"|PF00712|IPR001001| GO:PFM GO:0008408|"GO:3'-5' exonuclease activity"|PF00712|IPR001001| GO:PFM GO:0009360|"GO:DNA polymerase III complex"|PF00712|IPR001001| GO:PFM GO:0003677|"GO:DNA binding"|PF02767|IPR001001| GO:PFM GO:0003887|"GO:DNA-directed DNA polymerase activity"|PF02767|IPR001001| GO:PFM GO:0006260|"GO:DNA replication"|PF02767|IPR001001| GO:PFM GO:0008408|"GO:3'-5' exonuclease activity"|PF02767|IPR001001| GO:PFM GO:0009360|"GO:DNA polymerase III complex"|PF02767|IPR001001| GO:PFM GO:0003677|"GO:DNA binding"|PF02768|IPR001001| GO:PFM GO:0003887|"GO:DNA-directed DNA polymerase activity"|PF02768|IPR001001| GO:PFM GO:0006260|"GO:DNA replication"|PF02768|IPR001001| GO:PFM GO:0008408|"GO:3'-5' exonuclease activity"|PF02768|IPR001001| GO:PFM GO:0009360|"GO:DNA polymerase III complex"|PF02768|IPR001001| RP:SCP:NREP 3 RP:SCP:REP 1->119|1jqjA1|3e-25|28.6|119/122|d.131.1.1| RP:SCP:REP 123->246|1vpkA2|2e-29|26.4|121/123|d.131.1.1| RP:SCP:REP 247->367|1vpkA3|4e-30|23.1|121/123|d.131.1.1| HM:SCP:REP 1->116|1vpkA2|4.8e-23|25.9|116/0|d.131.1.1|1/3|DNA clamp| HM:SCP:REP 126->246|1vpkA2|2.8e-25|32.2|118/0|d.131.1.1|2/3|DNA clamp| HM:SCP:REP 247->367|2polA3|4e-33|38.8|121/0|d.131.1.1|1/1|DNA clamp| OP:NHOMO 934 OP:NHOMOORG 887 OP:PATTERN -------------------------------------------------------------------- 1111111111111111112-1111111111111111211111-1111111111111111111111111111----1111111111111111111111111111111121111111111111111111111111111111111111112211111111111111111122111111111111111111111131122222232123323311111122211111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111112312111111111111111111111111111111111121111111111111111111111111111111111111-11111111111111121111111111111113111111111111111111111111111211111111111111111111111111211111111111111111111111111111111111111111111111212111111111111211111111111121111-11-111-1111111111111111111111111111111111111111111111111111111111111111111111111111-1111111111111111111111111111-11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111121111111111111111111111111111111111111111111111111111111111111111111-111-1--111------11-------1111111111111 --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1---- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 367 STR:RPRED 100.0 SQ:SECSTR cEEEEEHHHHHHHHHHHHTTcccccccGGGGEEEEEEcccEEEEEEEcccEEEEEEEETTEEEcEEEEEEHHHHHHHHHHccccEEEEEEETTTEEEEEETTEEEEEEcccGGGcccccccccccccEEEEHHHHHHHHHHHGGGccccTTcGGGGEEEEEETTTEEEEEEEcccEEEEEEEEcccccccccEEEEEEHHHHHHHHHHccTTccEEEEEEcccEEEEEcccEEEEEEcccccccccGGGccccccEEEEEEHHHHHHHHHHHHHHTTcccccEEEEEETTEEEEEEEETTTEEEEEEEccEEEEccEEEEEcHHHHHHHHHTccccEEEEEEccccccEEEEEcccccEEEEccccc DISOP:02AL 367-368| PSIPRED cEEEEEHHHHHHHHHHHHHHccccccccHHcEEEEEEEccEEEEEEEccEEEEEEEEEEEEcccEEEEEEHHHHHHHHHHcccccEEEEEEEccEEEEEEcccEEEEEcccHHHcccccccccccEEEEEEHHHHHHHHHHHHHHcccccccEEEEEEEEEEEccEEEEEEEcccEEEEEEEEcccccccccEEEEEEHHHHHHHHHHHcccccEEEEEEEccEEEEEEccEEEEEEcccccccccHHcccccccEEEEEEHHHHHHHHHHHHHHHcccccEEEEEEEccEEEEEEEccccEEEEEEEEEEEccccEEEEEcHHHHHHHHHHccccEEEEEEcccccEEEEEEccccEEEEEEEEEc //