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Francisella tularensis subsp. mediasiatica FSC147 (ftul2)
Gene : hfq
DDBJ      :hfq          host factor I for bacteriophage Q beta replication
Swiss-Prot:HFQ_FRATM    RecName: Full=Protein hfq;

Homologs  Archaea  0/68 : Bacteria  489/915 : Eukaryota  1/199 : Viruses  0/175   --->[See Alignment]
b.38.1
:109 amino acids
:SECSTR
:PSIPRED
:BLT:PDB   6->70 1u1tE PDBj 3e-26 75.4 %
:RPS:PDB   10->71 1b34B PDBj 6e-10 31.7 %
:RPS:SCOP  6->68 1hk9A  b.38.1.2 * 2e-24 77.8 %
:HMM:SCOP  6->70 1hk9A_ b.38.1.2 * 1.3e-22 58.5 %
:HMM:PFM   17->64 PF01423 * LSM 8e-11 29.2 48/68  
:BLT:SWISS 1->109 HFQ_FRATM 5e-60 100.0 %

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID ACD30683.1 GT:GENE hfq GT:PRODUCT host factor I for bacteriophage Q beta replication GT:DATABASE GIB00719CH01 GT:ORG ftul2 GB:ACCESSION GIB00719CH01 GB:LOCATION 770391..770720 GB:FROM 770391 GB:TO 770720 GB:DIRECTION + GB:GENE hfq GB:PRODUCT host factor I for bacteriophage Q beta replication GB:PROTEIN_ID ACD30683.1 GB:DB_XREF GI:187712386 GB:GENE:GENE hfq LENGTH 109 SQ:AASEQ MSRISSLQDPFLNALRKEKVNVSVYLVNGIKLQGQVEAFDQFCIVLRNTVNQMVYKHAISTIVPAKSVRMVYSSFNPYHQNSNDEQDENVDDIHSDDLEIQENEGNIHE GT:EXON 1|1-109:0| SW:ID HFQ_FRATM SW:DE RecName: Full=Protein hfq; SW:GN Name=hfq; OrderedLocusNames=FTM_0705; SW:KW Complete proteome; RNA-binding; Stress response. SW:EXACT T SW:FUNC + BL:SWS:NREP 1 BL:SWS:REP 1->109|HFQ_FRATM|5e-60|100.0|109/109| GO:SWS:NREP 2 GO:SWS GO:0003723|"GO:RNA binding"|RNA-binding| GO:SWS GO:0006950|"GO:response to stress"|Stress response| BL:PDB:NREP 1 BL:PDB:REP 6->70|1u1tE|3e-26|75.4|65/69| RP:PDB:NREP 1 RP:PDB:REP 10->71|1b34B|6e-10|31.7|60/74| HM:PFM:NREP 1 HM:PFM:REP 17->64|PF01423|8e-11|29.2|48/68|LSM| RP:SCP:NREP 1 RP:SCP:REP 6->68|1hk9A|2e-24|77.8|63/64|b.38.1.2| HM:SCP:REP 6->70|1hk9A_|1.3e-22|58.5|65/0|b.38.1.2|1/1|Sm-like ribonucleoproteins| OP:NHOMO 517 OP:NHOMOORG 490 OP:PATTERN -------------------------------------------------------------------- 111--------------------------------------------------------------------------------11121-------------------------------------------------------------------------------------------------------111111111111111111111111111111-11111111111------------------------------------------------------------------------------------------11111111111111111111111--1--1--1111211111111111------111111111111111111111111111111111-11111111111-12-1111111111111111111111111111111111111111------------------------------1111111111222222222222222212222222111111111111111111111111111111111111111111----------------1--11111---------------------------------111121111111111111111111111111111-11111------11111111111111111-11111111111111111111111111111111111111111111111111111111111111111-111-----1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111--1-111111------------------------------------1111111111--- -------------------------------------------------------------------------------------------------------------------------------------------------------------------1----------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 66 STR:RPRED 60.6 SQ:SECSTR #####TTHHHHHHHHHHHTcEEEEEETTccEEEEEEEEEcTTcEEEEEEEEccEEEEEEEEEEcGGGEEEE###################################### PSIPRED cccccccHHHHHHHHHHHcccEEEEEEccEEEEEEEEEEEEEEEEEEccccEEEEEEEEEEEcccccccccccccccccccccccccccHHHHHHHHHHHHHccccccc //