[GTOP] [HELP] [ORGANISMS] [SEARCH] [SUMMARY]
Francisella tularensis subsp. mediasiatica FSC147 (ftul2)
Gene : holB
DDBJ      :holB         DNA polymerase III, delta prime subunit
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  41/915 : Eukaryota  0/199 : Viruses  0/175   --->[See Alignment]
a.80.1c.37.1
:303 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   94->176 3glhD PDBj 1e-06 31.3 %
:RPS:PDB   94->150 1a5tA PDBj 3e-06 42.1 %
:RPS:SCOP  7->149 1jr3A2  c.37.1.20 * 2e-13 21.7 %
:HMM:SCOP  13->207 2gnoA2 c.37.1.20 * 1.9e-21 26.8 %
:HMM:SCOP  192->303 1a5tA1 a.80.1.1 * 4.1e-08 25.5 %
:RPS:PFM   194->290 PF09115 * DNApol3-delta_C 2e-08 36.5 %
:HMM:PFM   193->301 PF09115 * DNApol3-delta_C 1.3e-13 22.2 108/119  
:HMM:PFM   167->212 PF03086 * DUF240 6.9e-05 31.1 45/120  
:HMM:PFM   58->104 PF05763 * DUF835 0.00038 19.1 47/136  
:BLT:SWISS 43->264 HOLB_BUCAP 1e-12 25.1 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID ACD31273.1 GT:GENE holB GT:PRODUCT DNA polymerase III, delta prime subunit GT:DATABASE GIB00719CH01 GT:ORG ftul2 GB:ACCESSION GIB00719CH01 GB:LOCATION complement(1553145..1554056) GB:FROM 1553145 GB:TO 1554056 GB:DIRECTION - GB:GENE holB GB:PRODUCT DNA polymerase III, delta prime subunit GB:PROTEIN_ID ACD31273.1 GB:DB_XREF GI:187712976 GB:GENE:GENE holB LENGTH 303 SQ:AASEQ MLSLTTHQQLIDNFLEQKAKQTLRHAFIFRVEDAVLLDSFINSLCQLLLGEKILSYDDSPYINIAAIENDEIKVAEIKKIIKNCELTAHNNLAKIIIIQGLDLLNESAANALLKTLEEPTQNTFFLMFTRNYSDVLATVKSRSLVYDIKFTQKDKYNYLSYTFDMSKDAIEKSLQMTRNDINIIAKIKLEQHFWQLRNNLMKVLANQVNLNVFLKEANPHFKDTLYWLTSMIIDVYCYKLDEQNQGIANYDKLAIIKYLAAKFDADCIYKLYSKALEAQSYFVKFKNVDKELILENLILEIIK GT:EXON 1|1-303:0| BL:SWS:NREP 1 BL:SWS:REP 43->264|HOLB_BUCAP|1e-12|25.1|219/328| SEG 71->82|eikvaeikkiik| SEG 291->302|elilenlileii| BL:PDB:NREP 1 BL:PDB:REP 94->176|3glhD|1e-06|31.3|83/363| RP:PDB:NREP 1 RP:PDB:REP 94->150|1a5tA|3e-06|42.1|57/324| RP:PFM:NREP 1 RP:PFM:REP 194->290|PF09115|2e-08|36.5|96/119|DNApol3-delta_C| HM:PFM:NREP 3 HM:PFM:REP 193->301|PF09115|1.3e-13|22.2|108/119|DNApol3-delta_C| HM:PFM:REP 167->212|PF03086|6.9e-05|31.1|45/120|DUF240| HM:PFM:REP 58->104|PF05763|0.00038|19.1|47/136|DUF835| GO:PFM:NREP 4 GO:PFM GO:0003677|"GO:DNA binding"|PF09115|IPR015199| GO:PFM GO:0003887|"GO:DNA-directed DNA polymerase activity"|PF09115|IPR015199| GO:PFM GO:0006260|"GO:DNA replication"|PF09115|IPR015199| GO:PFM GO:0009360|"GO:DNA polymerase III complex"|PF09115|IPR015199| RP:SCP:NREP 1 RP:SCP:REP 7->149|1jr3A2|2e-13|21.7|143/240|c.37.1.20| HM:SCP:REP 13->207|2gnoA2|1.9e-21|26.8|190/0|c.37.1.20|1/1|P-loop containing nucleoside triphosphate hydrolases| HM:SCP:REP 192->303|1a5tA1|4.1e-08|25.5|110/123|a.80.1.1|1/1|DNA polymerase III clamp loader subunits, C-terminal domain| OP:NHOMO 41 OP:NHOMOORG 41 OP:PATTERN -------------------------------------------------------------------- ---------------------------------------------------------------------------------------------------1----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1-1111111-1--111-----1--------------------------------------------------------------------------------------------------------------------------------------------------1----------------------------------------------------------------------------1-----------------------------------------------------------------------------------------------111-----1-------------------------------------1-11--------------------------1-------------1---------------------1-1111---------------------------------111111111--------------------------------------------------------1-----------1------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 119 STR:RPRED 39.3 SQ:SECSTR ##################################################################################TccEEEEEEETEEEEEccGGGccHHHHHHHHHHHTcccTTEEEEEEEccGGGccHHHHTTcEEEEcccHHHHHHHTccccccTTTccHHHHHHHHHTccccHHHHHHTccccccccHHH###################################################################################################### DISOP:02AL 302-304| PSIPRED ccccccHHHHHHHHHHHHHcccccEEEEEcccccccHHHHHHHHHHHHccccHHcccccccEEEEEcccccccHHHHHHHHHHHHHcHHHcccEEEEEEcHHHccHHHHHHHHHHHHcccccEEEEEEEccHHHccHHHHHcEEEEEcccccHHHHHHHHHHccccHHHHHHHHHHccccHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHcc //