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Francisella tularensis subsp. mediasiatica FSC147 (ftul2)
Gene : hupB
DDBJ      :hupB         DNA-binding protein HU-beta
Swiss-Prot:             

Homologs  Archaea  4/68 : Bacteria  812/915 : Eukaryota  10/199 : Viruses  2/175   --->[See Alignment]
a.55.1
:90 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   1->90 1hueA PDBj 5e-27 54.4 %
:RPS:PDB   1->90 3c4iA PDBj 1e-21 34.4 %
:RPS:SCOP  1->67 1b8zA  a.55.1.1 * 2e-16 36.4 %
:HMM:SCOP  1->90 1exeA_ a.55.1.1 * 1.1e-31 51.1 %
:RPS:PFM   1->90 PF00216 * Bac_DNA_binding 4e-18 58.9 %
:HMM:PFM   1->90 PF00216 * Bac_DNA_binding 3.4e-38 57.8 90/90  
:BLT:SWISS 1->89 DBHB_PSEAE 4e-29 67.4 %
:PROS 46->65|PS00045|HISTONE_LIKE

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID ACD30680.1 GT:GENE hupB GT:PRODUCT DNA-binding protein HU-beta GT:DATABASE GIB00719CH01 GT:ORG ftul2 GB:ACCESSION GIB00719CH01 GB:LOCATION 767534..767806 GB:FROM 767534 GB:TO 767806 GB:DIRECTION + GB:GENE hupB GB:PRODUCT DNA-binding protein HU-beta GB:PROTEIN_ID ACD30680.1 GB:DB_XREF GI:187712383 GB:GENE:GENE hupB LENGTH 90 SQ:AASEQ MNKSELVSAIAKEADVTKEVASNTLDATIAAVTKALKNGDSVTLVGFGTFQVKERSPREGRNPKTGETIKIPASKVPSFKASKGLKDAVK GT:EXON 1|1-90:0| BL:SWS:NREP 1 BL:SWS:REP 1->89|DBHB_PSEAE|4e-29|67.4|89/90| PROS 46->65|PS00045|HISTONE_LIKE|PDOC00044| BL:PDB:NREP 1 BL:PDB:REP 1->90|1hueA|5e-27|54.4|90/90| RP:PDB:NREP 1 RP:PDB:REP 1->90|3c4iA|1e-21|34.4|90/99| RP:PFM:NREP 1 RP:PFM:REP 1->90|PF00216|4e-18|58.9|90/90|Bac_DNA_binding| HM:PFM:NREP 1 HM:PFM:REP 1->90|PF00216|3.4e-38|57.8|90/90|Bac_DNA_binding| GO:PFM:NREP 1 GO:PFM GO:0003677|"GO:DNA binding"|PF00216|IPR000119| RP:SCP:NREP 1 RP:SCP:REP 1->67|1b8zA|2e-16|36.4|66/67|a.55.1.1| HM:SCP:REP 1->90|1exeA_|1.1e-31|51.1|90/99|a.55.1.1|1/1|IHF-like DNA-binding proteins| OP:NHOMO 2090 OP:NHOMOORG 828 OP:PATTERN ------------------------------1------------------------------111---- 242-2---------11111-11111111111111111111111151-1111-1111111112111-121211111111----1-12333434-422---22222221-11---------------2232222242211111---2173112211122111111111321411111111111111211111-311333333333344344221112334111111111111112-1111111111111111111111211211111111111211112211111111111111111111111-111111111111111111111211111111111111211111111-1111111111113211111112112121644333223312123322222333333333333-11112221333-5557333444333334332235333336666666657545943----------111111111111111----2345333333333353343333335632333334544542365532232324243336464454333433333343745445246453566154587554B3333425411--111111111111111112-11444551445335455555554555445444441-3434331122244444444444444244-44444444444444444444444444444444444444444444444444451444444444444--6322222333343443333333233333333333333333364555544554444444441111111113644444444445443333433333333322D-----------------11711----2-1------1----11-12111111111-2 ------------------------------------------------------------------------------------------------------------1-------------------------------------------------------------2----111--1111--------1------ ---------------------------1--------------------------------------------------------------------------------------------------1------------------------------------------------ STR:NPRED 90 STR:RPRED 100.0 SQ:SECSTR ccHHHHHHHHHHHHTccHHHHHHHHHHHHHHHHHHHHTTccEEETTTEEEEEEEEccEEEEcTTTccEEEEccEEEEEEEEcHHHHHHHH DISOP:02AL 90-91| PSIPRED ccHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHccccEEEccEEEEEEEEEccccccccccccEEEEccccEEEEEccHHHHHHHc //