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Francisella tularensis subsp. mediasiatica FSC147 (ftul2)
Gene : nusA
DDBJ      :nusA         transcription termination factor NusA
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  908/915 : Eukaryota  4/199 : Viruses  0/175   --->[See Alignment]
a.60.3a.60.4b.40.4d.202.1d.52.3
:489 amino acids
:SECSTR
:PSIPRED
:BLT:PDB   1->346 1hh2P PDBj 5e-51 35.0 %
:BLT:PDB   360->422 1wclA PDBj 8e-15 55.6 %
:BLT:PDB   424->488 1wcnA PDBj 2e-06 40.0 %
:RPS:PDB   93->279 2ba0A PDBj 4e-16 12.4 %
:RPS:PDB   260->348 2cxcA PDBj 1e-19 26.7 %
:RPS:PDB   363->458 2bcrA PDBj 4e-09 13.5 %
:RPS:SCOP  1->128 1hh2P4  d.202.1.1 * 2e-28 33.6 %
:RPS:SCOP  136->204 1k0rA1  b.40.4.5 * 6e-13 32.8 %
:RPS:SCOP  233->282 1hh2P2  d.52.3.1 * 2e-12 60.0 %
:RPS:SCOP  283->351 1hh2P3  d.52.3.1 * 4e-06 35.8 %
:RPS:SCOP  361->428 1lb2B  a.60.3.1 * 5e-07 22.7 %
:HMM:SCOP  1->129 1hh2P4 d.202.1.1 * 3.9e-31 38.9 %
:HMM:SCOP  134->204 1k0rA1 b.40.4.5 * 6e-15 37.7 %
:HMM:SCOP  205->282 1hh2P2 d.52.3.1 * 3.2e-28 51.3 %
:HMM:SCOP  284->352 1k0rA3 d.52.3.1 * 7.5e-14 31.3 %
:HMM:SCOP  356->423 1u9lA_ a.60.4.2 * 1.6e-15 45.6 %
:HMM:SCOP  421->490 1b22A_ a.60.4.1 * 5.7e-13 38.6 %
:RPS:PFM   4->127 PF08529 * NusA_N 3e-14 39.7 %
:HMM:PFM   4->128 PF08529 * NusA_N 6.2e-33 41.0 122/122  
:HMM:PFM   136->194 PF00575 * S1 1e-10 30.5 59/74  
:HMM:PFM   352->413 PF03118 * RNA_pol_A_CTD 2.7e-07 29.0 62/67  
:BLT:SWISS 1->488 NUSA_SHIFL e-101 42.5 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID ACD30211.1 GT:GENE nusA GT:PRODUCT transcription termination factor NusA GT:DATABASE GIB00719CH01 GT:ORG ftul2 GB:ACCESSION GIB00719CH01 GB:LOCATION 121041..122510 GB:FROM 121041 GB:TO 122510 GB:DIRECTION + GB:GENE nusA GB:PRODUCT transcription termination factor NusA GB:PROTEIN_ID ACD30211.1 GB:DB_XREF GI:187711914 GB:GENE:GENE nusA LENGTH 489 SQ:AASEQ MSKELLLVLETVANEKDISKDLLFEAMEEALAIITKKELDEHMNIEVKIDRVTGDFKADRVWHIVSEDEDLIDYSKELYEDVVQEKGYNVKAGDVMREPVEVKEYGRIAATMAKQILMKKIKNFEREKSARFYQNKIGDIVYGEIKRATYEILVVDLGNNAEGILPKKDLIARERYRVGDKIRACVEAVESDESGKPNTIMLSRSSNTMLKALFKLEVPEVEEELINIVNVVREPGFRSKVTVKSNDQRIDPCGACVGVRGSRIHSIMSELNGEKVDVILWNEDMVQYAINSLSPVDAADILEVNVDEETNSMDIVVKQESLSKAIGKNGVNVRLASSLIGWKINVLSDAEQEEKQMSIVEKFVEALDIDHDFALVLIEEGIETLEDLAYLDRAELLEIEGFDEEIVDELQERAKAVILSQALGGKKPAQDLLDMQGMSLDLAEQLAQNNIVTMEDLAELSVDELLDIVDIDEEQATNLIMQARAPWFE GT:EXON 1|1-489:0| BL:SWS:NREP 1 BL:SWS:REP 1->488|NUSA_SHIFL|e-101|42.5|480/495| SEG 216->232|levpeveeelinivnvv| SEG 459->474|elsvdelldivdidee| BL:PDB:NREP 3 BL:PDB:REP 1->346|1hh2P|5e-51|35.0|337/344| BL:PDB:REP 360->422|1wclA|8e-15|55.6|63/76| BL:PDB:REP 424->488|1wcnA|2e-06|40.0|65/70| RP:PDB:NREP 3 RP:PDB:REP 93->279|2ba0A|4e-16|12.4|186/218| RP:PDB:REP 260->348|2cxcA|1e-19|26.7|86/138| RP:PDB:REP 363->458|2bcrA|4e-09|13.5|96/325| RP:PFM:NREP 1 RP:PFM:REP 4->127|PF08529|3e-14|39.7|121/122|NusA_N| HM:PFM:NREP 3 HM:PFM:REP 4->128|PF08529|6.2e-33|41.0|122/122|NusA_N| HM:PFM:REP 136->194|PF00575|1e-10|30.5|59/74|S1| HM:PFM:REP 352->413|PF03118|2.7e-07|29.0|62/67|RNA_pol_A_CTD| GO:PFM:NREP 3 GO:PFM GO:0003700|"GO:transcription factor activity"|PF08529|IPR013735| GO:PFM GO:0005515|"GO:protein binding"|PF08529|IPR013735| GO:PFM GO:0031554|"GO:regulation of transcription termination"|PF08529|IPR013735| RP:SCP:NREP 5 RP:SCP:REP 1->128|1hh2P4|2e-28|33.6|125/126|d.202.1.1| RP:SCP:REP 136->204|1k0rA1|6e-13|32.8|67/76|b.40.4.5| RP:SCP:REP 233->282|1hh2P2|2e-12|60.0|50/78|d.52.3.1| RP:SCP:REP 283->351|1hh2P3|4e-06|35.8|67/68|d.52.3.1| RP:SCP:REP 361->428|1lb2B|5e-07|22.7|66/72|a.60.3.1| HM:SCP:REP 1->129|1hh2P4|3.9e-31|38.9|126/126|d.202.1.1|1/1|Transcription factor NusA, N-terminal domain| HM:SCP:REP 134->204|1k0rA1|6e-15|37.7|69/0|b.40.4.5|1/1|Nucleic acid-binding proteins| HM:SCP:REP 205->282|1hh2P2|3.2e-28|51.3|78/0|d.52.3.1|1/1|Prokaryotic type KH domain (KH-domain type II)| HM:SCP:REP 284->352|1k0rA3|7.5e-14|31.3|67/67|d.52.3.1|1/1|Prokaryotic type KH domain (KH-domain type II)| HM:SCP:REP 356->423|1u9lA_|1.6e-15|45.6|68/0|a.60.4.2|1/2|Rad51 N-terminal domain-like| HM:SCP:REP 421->490|1b22A_|5.7e-13|38.6|70/0|a.60.4.1|2/2|Rad51 N-terminal domain-like| OP:NHOMO 913 OP:NHOMOORG 912 OP:PATTERN -------------------------------------------------------------------- 1111111111111111111-11111111111111111111111111111111111111111111111111111111111111111111111111111--1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111-11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111-1111111111111111111111111111-11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111-11111111111111111111111111111111 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------1-----1---1---------1---------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 488 STR:RPRED 99.8 SQ:SECSTR HHHHHHHHHHHHcccccGGGGGGcTTccHHHHHHHGGGEEcTTcccGGGGccccGGGHHHHHHHHHHHHHHTccHHHHTTcHHHHHHccGGGTcEEEccTTcccTTEEEETTEEEEcccEEEEEccccEEccccccTTcEEEEEEEEEcccEEEEEccccccEEEEGGGccGGGTccTTcEEEEEEEEEcTTccEEEEEccccccEEEcccEEEEccGGGHHHHHcGGGHHHHHHHHHHTcEEEEcTTcEEEEEccHHHGGGHHHHHHHHHHccEEEEEEccccHHHHHHHHcTTEcHccEEEEEEEEETTEEEEEEcTTTHHHHHcGGGHHHHHHHHHHHHHHcEEEEEEccHHHHHHHHHHHHHHHHHTTccHHHHHHHHcccHHHHTccHHHHTTcTTccHHHHHHHHHHTTHHHTTcccGGGGcHHHHHTcTTccHHHHHHHHHTTcccHHHHHTccHHHHHTcccccHHHHHHHHHHHHHHTT# PSIPRED ccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHccccccEEEEEcccccEEEEEEEEEEEccccccccccccccHHHHHHHccccccccEEEEEccHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEEEEEEEccEEEEEEcccEEEEEcHHHcccccccccccEEEEEEEEEEEcccccccEEEEEEccHHHHHHHHHHHcHHHHccEEEEEEEEEccccEEEEEEEEccccccEEEEEEccccHHHHHHHHHHccccEEEEEccccHHHHHHHHccccccccEEEEEEcccccEEEEEEcHHHccHHHccccHHHHHHHHHHccEEccccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHcccccHHHHHcccHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHcccccHHHHHHHHHcccEEHHHHHcccHHHHcccccccHHHHHHHHHHHHHcccc //