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Francisella tularensis subsp. mediasiatica FSC147 (ftul2)
Gene : rho
DDBJ      :rho          transcription termination factor Rho
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  779/915 : Eukaryota  3/199 : Viruses  0/175   --->[See Alignment]
a.140.3a.35.1b.40.4c.37.1
:420 amino acids
:PSIPRED
:BLT:PDB   1->416 1pvoA PDBj e-160 72.0 %
:RPS:PDB   46->413 2ck3D PDBj 8e-60 19.2 %
:RPS:SCOP  2->46 1a62A1  a.140.3.1 * 4e-13 53.3 %
:RPS:SCOP  47->124 1a62A2  b.40.4.5 * 4e-19 69.2 %
:RPS:SCOP  100->363 1bmfD3  c.37.1.11 * 2e-52 22.6 %
:RPS:SCOP  340->403 1x2lA1  a.35.1.7 * 4e-09 14.1 %
:HMM:SCOP  1->46 1a62A1 a.140.3.1 * 9.3e-10 56.5 %
:HMM:SCOP  47->124 1a62A2 b.40.4.5 * 1.3e-31 57.7 %
:HMM:SCOP  88->371 1e79A3 c.37.1.11 * 8e-73 34.7 %
:RPS:PFM   6->45 PF07498 * Rho_N 1e-04 55.0 %
:RPS:PFM   50->124 PF07497 * Rho_RNA_bind 2e-24 63.0 %
:RPS:PFM   159->358 PF00006 * ATP-synt_ab 1e-13 32.3 %
:HMM:PFM   158->362 PF00006 * ATP-synt_ab 8.1e-46 29.0 200/215  
:HMM:PFM   48->124 PF07497 * Rho_RNA_bind 1.2e-37 57.1 77/78  
:HMM:PFM   5->46 PF07498 * Rho_N 2.6e-15 57.1 42/43  
:BLT:SWISS 1->417 RHO_PSEAE e-172 70.0 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID ACD31303.1 GT:GENE rho GT:PRODUCT transcription termination factor Rho GT:DATABASE GIB00719CH01 GT:ORG ftul2 GB:ACCESSION GIB00719CH01 GB:LOCATION 1593977..1595239 GB:FROM 1593977 GB:TO 1595239 GB:DIRECTION + GB:GENE rho GB:PRODUCT transcription termination factor Rho GB:PROTEIN_ID ACD31303.1 GB:DB_XREF GI:187713006 GB:GENE:GENE rho LENGTH 420 SQ:AASEQ MNLNELKYKSVNELMDIAQSLDLESLRARKQELIFSILKYHADKGEDIYGEGILEVLQDGYGFLRSSDSSYFASPDDIYVSPAFIRKLNLRTGDSIVGKIRPPRENEKYFAVKHIDSVNFDSPELARKKILFENLTPEYTKERLTMEIGNGSNEDITARVIDLAAPFGKGQRGLIVAPPKTGKTIMMQNIATSIAKNHPECNLIMLLIDERPEEVTEMQRSVRGEVVASTFDEPAARHVQLAEIVIEKAKRLVEHKQDVVILLDSITRLARAYNTVSPASGRVLSGGVEANALQKPKRFFGAARNTAEGGSLTIIATALVETGSKMDEVIFEEFKGTGNMELHLDRKIAERRVFPAISFDRSGTRREELLTTPEELQKLWVLRKILGGMEDVQAMEFLTEKMKGSLTNEEFFETMKRGAI GT:EXON 1|1-420:0| BL:SWS:NREP 1 BL:SWS:REP 1->417|RHO_PSEAE|e-172|70.0|417/419| SEG 364->376|trreellttpeel| BL:PDB:NREP 1 BL:PDB:REP 1->416|1pvoA|e-160|72.0|407/408| RP:PDB:NREP 1 RP:PDB:REP 46->413|2ck3D|8e-60|19.2|359/467| RP:PFM:NREP 3 RP:PFM:REP 6->45|PF07498|1e-04|55.0|40/42|Rho_N| RP:PFM:REP 50->124|PF07497|2e-24|63.0|73/75|Rho_RNA_bind| RP:PFM:REP 159->358|PF00006|1e-13|32.3|195/212|ATP-synt_ab| HM:PFM:NREP 3 HM:PFM:REP 158->362|PF00006|8.1e-46|29.0|200/215|ATP-synt_ab| HM:PFM:REP 48->124|PF07497|1.2e-37|57.1|77/78|Rho_RNA_bind| HM:PFM:REP 5->46|PF07498|2.6e-15|57.1|42/43|Rho_N| GO:PFM:NREP 6 GO:PFM GO:0003715|"GO:transcription termination factor activity"|PF07498|IPR011112| GO:PFM GO:0006353|"GO:transcription termination"|PF07498|IPR011112| GO:PFM GO:0003715|"GO:transcription termination factor activity"|PF07497|IPR011113| GO:PFM GO:0003723|"GO:RNA binding"|PF07497|IPR011113| GO:PFM GO:0006353|"GO:transcription termination"|PF07497|IPR011113| GO:PFM GO:0005524|"GO:ATP binding"|PF00006|IPR000194| RP:SCP:NREP 4 RP:SCP:REP 2->46|1a62A1|4e-13|53.3|45/47|a.140.3.1| RP:SCP:REP 47->124|1a62A2|4e-19|69.2|78/78|b.40.4.5| RP:SCP:REP 100->363|1bmfD3|2e-52|22.6|257/276|c.37.1.11| RP:SCP:REP 340->403|1x2lA1|4e-09|14.1|64/87|a.35.1.7| HM:SCP:REP 1->46|1a62A1|9.3e-10|56.5|46/0|a.140.3.1|1/1|Rho termination factor, N-terminal domain| HM:SCP:REP 47->124|1a62A2|1.3e-31|57.7|78/78|b.40.4.5|1/1|Nucleic acid-binding proteins| HM:SCP:REP 88->371|1e79A3|8e-73|34.7|268/0|c.37.1.11|1/1|P-loop containing nucleoside triphosphate hydrolases| OP:NHOMO 1178 OP:NHOMOORG 782 OP:PATTERN -------------------------------------------------------------------- 1121211111111111111-111111111111111111112111111121121211111111211112221111111111111112221111111111111111111131222222222222221111111111113331111-12-------------------------------------11111111222111111111111111212212111222222211111122111111111111111111111----------11-----11--------------------------------------------------222121111111313211111112121111111--221222222222211223211211111224222222322311111111111-33333233332132223332222221212122222222211111111111212322222222211111111111111111111111112112221222242211112231222312123211111112221111112112211111321111111111112223112122222233111111121333331111111111111111111111111221111211122111113121211111211112211-1121111111122123121331111111-31112211113121111111112132233333333333333331122211241444444333343112111111222211412111111111111111111-1111111133232222322222333111111111111121111123111222222222211-111221111112221221222--------------------1-----2112221222122 --------------------------------------------------------------------------------------------------------------------------------------------------------------2--------------------------1--------2---- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PSIPRED ccHHHHHcccHHHHHHHHHHHccccccccHHHHHHHHHHHHHHcccEEEEEEEEEEcccccccEEccccccccccccccccHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHcccccccEEEcccccccHHHHHHHHHHHHHcccccEEEEEEEEcccHHHHHHHHHHccEEEEEEcccccHHHHHHHHHHHHHHHHHHHHccccEEEEEEccHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHcccccccEEEEEEEEEcccccccccHHHHHHHEEEEEEEEEHHHHHccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHccc //