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Francisella tularensis subsp. mediasiatica FSC147 (ftul2)
Gene : rluD
DDBJ      :rluD         ribosomal large subunit pseudouridine synthase D
Swiss-Prot:             

Homologs  Archaea  5/68 : Bacteria  902/915 : Eukaryota  154/199 : Viruses  0/175   --->[See Alignment]
d.265.1d.66.1
:332 amino acids
:SECSTR
:PSIPRED
:BLT:PDB   22->306 2istA PDBj 4e-62 47.9 %
:RPS:PDB   20->303 3dh3B PDBj 2e-32 17.8 %
:RPS:SCOP  20->109 1dm9A  d.66.1.3 * 2e-09 12.2 %
:RPS:SCOP  102->306 1v9kA  d.265.1.3 * 1e-52 31.3 %
:HMM:SCOP  24->123 1c06A_ d.66.1.2 * 5.4e-12 18.2 %
:HMM:SCOP  79->324 1przA_ d.265.1.3 * 3.8e-75 41.1 %
:RPS:PFM   102->246 PF00849 * PseudoU_synth_2 2e-30 50.0 %
:HMM:PFM   96->245 PF00849 * PseudoU_synth_2 1.7e-37 34.7 150/164  
:HMM:PFM   24->69 PF01479 * S4 4.1e-08 23.9 46/48  
:BLT:SWISS 21->312 RLUD_XYLFA 1e-66 45.0 %
:PROS 139->153|PS01129|PSI_RLU
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID ACD31016.1 GT:GENE rluD GT:PRODUCT ribosomal large subunit pseudouridine synthase D GT:DATABASE GIB00719CH01 GT:ORG ftul2 GB:ACCESSION GIB00719CH01 GB:LOCATION complement(1205693..1206691) GB:FROM 1205693 GB:TO 1206691 GB:DIRECTION - GB:GENE rluD GB:PRODUCT ribosomal large subunit pseudouridine synthase D GB:PROTEIN_ID ACD31016.1 GB:DB_XREF GI:187712719 GB:GENE:GENE rluD LENGTH 332 SQ:AASEQ MAHNTLSNRFHQNIIMHPKDAGKRIDVAINEQFEQFSRAQIQKWLKEGSITVNGRATKPKHIVLGDEEVEINIELLPTNEWIAEDINLKIIFEDDDIIVIDKPVNMIVHPGAGNPTGTVSNALLHRYKDQDKLPRAGIVHRLDKDTSGLMVAAKSSIAYHNLVQQLAERKVSRKYLAIVEGEIYQQGTINQPIGRDPTNRTKMAINYRGKEAITHYTPIEVYDGFTLIECQLETGRTHQIRVHMKSIKHPLVGDQTYNKSLTKLEKLAITIPTRQALHAYKLSFIHPTIAKMVKFKSKLPEDMLNLKAQLEQTVEMLDEDFEEDYYDYYEYD GT:EXON 1|1-332:0| BL:SWS:NREP 1 BL:SWS:REP 21->312|RLUD_XYLFA|1e-66|45.0|291/331| PROS 139->153|PS01129|PSI_RLU|PDOC00869| SEG 90->101|iifedddiivid| SEG 318->331|dedfeedyydyyey| BL:PDB:NREP 1 BL:PDB:REP 22->306|2istA|4e-62|47.9|282/321| RP:PDB:NREP 1 RP:PDB:REP 20->303|3dh3B|2e-32|17.8|236/241| RP:PFM:NREP 1 RP:PFM:REP 102->246|PF00849|2e-30|50.0|140/149|PseudoU_synth_2| HM:PFM:NREP 2 HM:PFM:REP 96->245|PF00849|1.7e-37|34.7|150/164|PseudoU_synth_2| HM:PFM:REP 24->69|PF01479|4.1e-08|23.9|46/48|S4| GO:PFM:NREP 4 GO:PFM GO:0001522|"GO:pseudouridine synthesis"|PF00849|IPR006145| GO:PFM GO:0003723|"GO:RNA binding"|PF00849|IPR006145| GO:PFM GO:0009451|"GO:RNA modification"|PF00849|IPR006145| GO:PFM GO:0009982|"GO:pseudouridine synthase activity"|PF00849|IPR006145| RP:SCP:NREP 2 RP:SCP:REP 20->109|1dm9A|2e-09|12.2|90/104|d.66.1.3| RP:SCP:REP 102->306|1v9kA|1e-52|31.3|201/227|d.265.1.3| HM:SCP:REP 24->123|1c06A_|5.4e-12|18.2|99/159|d.66.1.2|1/1|Alpha-L RNA-binding motif| HM:SCP:REP 79->324|1przA_|3.8e-75|41.1|246/252|d.265.1.3|1/1|Pseudouridine synthase| OP:NHOMO 2819 OP:NHOMOORG 1061 OP:PATTERN --------------------------------------11111------------------------- 1121121222221211111-11111111111111112211111111211111111211111112111111111111112111111222444414-211122223234424-2222222-211114111111111111222211131223233311222222213212222112111112111133311221433-3333333333333322333333333333223333334533333333333333333333-34344343334444444443333333333333333333333333333333333333333333333333332333333333333343333333334332342133141121212223132213333321222333222332322222222222223-323333332231233222222222333433332222333222222223222333222222222331122222222222222-22233333222222223222222222222222222222222222224332333332233332224423333332222547132427122322113333343347677952433323333333333333333433332266444454773599998A966698-A99892-3233322122244444554444444444-44444444444444444444444444544444444444444445444444431544444444444222422222222233625555455454554445444344434436333333333-33333332222222225777566666667663333333333222222443332112223222232211112-11111221112121122222222222222232 -----11-211122211111---111---------1----------11-11111--1---1-21122211232222322311111111-22111111-11--121111426222223-11113123121372-21212114222112112331332122-12323314112-1121212D955-2311614277311-5 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 312 STR:RPRED 94.0 SQ:SECSTR EcTTcccTTccEEcHHHHHcccEEHHHHHHTTTcEccHHHHHHHHHTTcEEETTEEccTTcEEcccccEEETTEEEccccGGGccEEEEEEEEEccccTTHEcTTcccccccccTTcHHHHHTcccccEHTcccccEEccccccccEEEEEEEccTHHHHHHHcGGcGGcccEEEEEEEccHHTccEEEEEcccHHHHHHHHTcccccccccccccccEEEEccccEEEEEEccccTTHHHHHHHHTTccEEEEEEEEETcEEEEEEEEEEETTEEcTTccTTcEEEccHHHHHHHHHTccccHHHHHHHHH#################### PSIPRED cccccccccEEEEEEEccccccccHHHHHHHHcccccHHHHHHHHHcccEEEccEEEccccEEccccEEEEEEEcccccccccccccEEEEEccccEEEEEccccEEEEcccccccccHHHHHHHHHHcccccccEEEEccccccccEEEEEEccHHHHHHHHHHHHHccccEEEEEEEEEEcccccEEEEccEEcccccEEEEEcccccccccEEEEEEEEccEEEEEEEEcccccHHHHHHHHHccccEEccccccccccccHHcccccccHHHHEEEEEEEcccccccEEEEEccccHHHHHHHHHHHHHHHHcccccccccccccccc //