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Francisella tularensis subsp. mediasiatica FSC147 (ftul2)
Gene : rnd
DDBJ      :rnd          ribonuclease D
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  392/915 : Eukaryota  175/199 : Viruses  0/175   --->[See Alignment]
a.60.8c.55.3
:364 amino acids
:SECSTR
:PSIPRED
:BLT:PDB   2->355 1yt3A PDBj 3e-27 26.1 %
:RPS:PDB   5->312 1bdp- PDBj 1e-23 10.7 %
:RPS:SCOP  2->180 1yt3A3  c.55.3.5 * 2e-28 30.2 %
:RPS:SCOP  192->254 1yt3A1  a.60.8.3 * 4e-09 25.4 %
:RPS:SCOP  298->359 1yt3A2  a.60.8.3 * 1e-08 21.0 %
:HMM:SCOP  2->205 2hbjA2 c.55.3.5 * 8.6e-63 37.9 %
:HMM:SCOP  189->253 1yt3A1 a.60.8.3 * 5.9e-10 21.5 %
:HMM:SCOP  282->364 1yt3A2 a.60.8.3 * 4.4e-08 25.0 %
:RPS:PFM   3->164 PF01612 * 3_5_exonuc 5e-19 33.3 %
:HMM:PFM   2->167 PF01612 * 3_5_exonuc 1.9e-47 37.3 166/174  
:HMM:PFM   216->254 PF00570 * HRDC 2.6e-11 33.3 39/68  
:BLT:SWISS 2->355 RND_HAEIN 4e-31 28.5 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID ACD31158.1 GT:GENE rnd GT:PRODUCT ribonuclease D GT:DATABASE GIB00719CH01 GT:ORG ftul2 GB:ACCESSION GIB00719CH01 GB:LOCATION 1404032..1405126 GB:FROM 1404032 GB:TO 1405126 GB:DIRECTION + GB:GENE rnd GB:PRODUCT ribonuclease D GB:PROTEIN_ID ACD31158.1 GB:DB_XREF GI:187712861 GB:GENE:GENE rnd LENGTH 364 SQ:AASEQ MIINTNKQLNNVIEILKNTSQIAVDTEFYWMRTYYPELCLVQLATENEIFLIDTLKDLEFKKLKEIFEDKDILKIIHSATNDIPIIKRFFNCEVNNIFDTQLAATFLGFQTQSSLKTLLKEILDIEIEKESQFSDWRNRPLTQNQLNYAIKDVEYLIQLKEYLQQQLAKSEYQDFFEQELIEVQKTQFNSIENIHAKIGNIQKFDEKTQRNAILIAQWRETIAQEKNIPVRFIFNNKILYTIAHINPKSLNSFEHSELKSLKPWIKKGVVTALNSSKSLDQVTLEQTSGSKLSTELNDKIIDFFDTYTKQLKFDSSIIASRKDIRSLAYNLNIDTNYKNNKLLNGWRYEIVGKKLKEYILSNTK GT:EXON 1|1-364:0| BL:SWS:NREP 1 BL:SWS:REP 2->355|RND_HAEIN|4e-31|28.5|344/399| SEG 115->130|lktllkeildieieke| BL:PDB:NREP 1 BL:PDB:REP 2->355|1yt3A|3e-27|26.1|349/375| RP:PDB:NREP 1 RP:PDB:REP 5->312|1bdp-|1e-23|10.7|308/574| RP:PFM:NREP 1 RP:PFM:REP 3->164|PF01612|5e-19|33.3|162/171|3_5_exonuc| HM:PFM:NREP 2 HM:PFM:REP 2->167|PF01612|1.9e-47|37.3|166/174|3_5_exonuc| HM:PFM:REP 216->254|PF00570|2.6e-11|33.3|39/68|HRDC| GO:PFM:NREP 4 GO:PFM GO:0003676|"GO:nucleic acid binding"|PF01612|IPR002562| GO:PFM GO:0005622|"GO:intracellular"|PF01612|IPR002562| GO:PFM GO:0006139|"GO:nucleobase, nucleoside, nucleotide and nucleic acid metabolic process"|PF01612|IPR002562| GO:PFM GO:0008408|"GO:3'-5' exonuclease activity"|PF01612|IPR002562| RP:SCP:NREP 3 RP:SCP:REP 2->180|1yt3A3|2e-28|30.2|179/193|c.55.3.5| RP:SCP:REP 192->254|1yt3A1|4e-09|25.4|63/101|a.60.8.3| RP:SCP:REP 298->359|1yt3A2|1e-08|21.0|62/81|a.60.8.3| HM:SCP:REP 2->205|2hbjA2|8.6e-63|37.9|203/0|c.55.3.5|1/1|Ribonuclease H-like| HM:SCP:REP 189->253|1yt3A1|5.9e-10|21.5|65/0|a.60.8.3|1/1|HRDC-like| HM:SCP:REP 282->364|1yt3A2|4.4e-08|25.0|80/0|a.60.8.3|1/1|HRDC-like| OP:NHOMO 652 OP:NHOMOORG 567 OP:PATTERN -------------------------------------------------------------------- ---1---1111-----------------------------------------------11------------------1111----------------------------------------------------------------111-1111-----1--1-11-11111-11111-11-1-----------------------------------------------------------------------------------------------------------------------------------------------1----------------------------------------------1-1111111211111111111111111111111111-11111111111-111111111111112211111111111111111111112111122222111111122222222222222222111111------------------------------------------------------------------------1111----------11111111111111-11---------------------------111111111111111111111111111111--1---1------11111111111111111-1111111111111111111111111111111111111111111111111111-111111111111--11---------111111111111111111111111111111111111111111111111111111111111111111111111111111111111111--1-222222----------------------------------------------111 --11112-211-11111111111-111111111111111111111111111-1-111111111111111111111-111111111111-1111--111111-1111-2112221212111-11132121292-21311--1-121111111-121111111112-7111121211--1-711122212313221-1111 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 353 STR:RPRED 97.0 SQ:SECSTR #EcccccEEcccccGGGcccEEEEEEEccccccTTccccEEEEEETTEEEEEcHHHHHHcHHHHHHHHcTTcEEEEccHHHHHHHHHTTTcccccEEEEHHHHHHHHcTTcccccHHHHHHTTTccccccHHHTTccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTcHHHHHHTHHHHHHHHHHHHHcEEEcHHHHHHHHHHHHHHHHHHHHHHHHHTTccccTTcHHHHHHHHHTTTcccccccccHHHHHHHGGGcHHHHHHHHHHHHHHHHHHHTHHHHTTccTTTcEEccEEEcccccccccEccHHHHccHHHHHHH#HHHHTTccccccGGGcHHHHHHHHHHH######### PSIPRED cEEccHHHHHHHHHHHHccccEEEEEccccccccccEEEEEEEEEccEEEEEEccccccHHHHHHHHcccccEEEEEEcHHHHHHHHHHccccEEEHHHHHHHHHHccccccccHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHcccHHHHHHccHHHHccHHHHHHHHHHHHHHHHHHHHHccccccEEcHHHHHHHHHHccccHHHHHHccccccccHHHHHHHHHHHHHccccHHHccccccccccHHHHHHHHHHHHHHHHHHcccHHHcccHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHcc //