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Francisella tularensis subsp. mediasiatica FSC147 (ftul2)
Gene : rne
DDBJ      :rne          ribonuclease E
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  710/915 : Eukaryota  14/199 : Viruses  0/175   --->[See Alignment]
b.40.4d.14.1
:885 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   1->485 2c4rL PDBj e-135 53.3 %
:RPS:PDB   1->502 2c0bL PDBj 3e-46 47.9 %
:RPS:SCOP  40->122 1smxA  b.40.4.5 * 2e-29 66.3 %
:RPS:SCOP  103->191 1a6fA  d.14.1.2 * 5e-17 21.3 %
:HMM:SCOP  39->122 1smxA_ b.40.4.5 * 3.7e-16 35.7 %
:RPS:PFM   37->115 PF00575 * S1 1e-07 40.8 %
:RPS:PFM   118->389 PF10150 * RNase_E_G 1e-66 50.9 %
:RPS:PFM   395->428 PF03506 * Flu_C_NS1 6e-04 44.1 %
:HMM:PFM   118->389 PF10150 * RNase_E_G 1.1e-98 49.4 269/271  
:HMM:PFM   36->115 PF00575 * S1 9.9e-14 26.4 72/74  
:HMM:PFM   395->428 PF03506 * Flu_C_NS1 0.00021 41.2 34/162  
:BLT:SWISS 1->577 RNE_HAEIN e-145 48.4 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID ACD30694.1 GT:GENE rne GT:PRODUCT ribonuclease E GT:DATABASE GIB00719CH01 GT:ORG ftul2 GB:ACCESSION GIB00719CH01 GB:LOCATION complement(781651..784308) GB:FROM 781651 GB:TO 784308 GB:DIRECTION - GB:GENE rne GB:PRODUCT ribonuclease E GB:PROTEIN_ID ACD30694.1 GB:DB_XREF GI:187712397 GB:GENE:GENE rne LENGTH 885 SQ:AASEQ MKRILINSKSGEETRIATLDNGKLIDLDIESVDREQKKANIYKGYISRIEPSLNAIFVNYGEEKNGFLPFKEVSEYYLKDVPNGENIAPLLSEGQELIVQIDKEERGDKGAALTTFITLAGSYMVLLPNNPEGGGISRRVEGEDRERLKKYLKELNIPKNMSVIARTACVECSFEELKHDFDTLVELWGSILQAYHRIKKPALLHKESDIIVRTVRDHLKEDVKEIIVDSKECFEDVKRQLSLLRQSFDINKVKLYNEELPLFAQFGIDQQIENAYKREIRLTSGGSIVIDTTEALVAIDVNSSRANKAEDVETTAFKTNLEAAEEVARQLRIRDLGGLVIVDFIDMSFYPNRKQVEEKLMEALQQDRARIQMSRISKLGLVEISRQRLSSSINESVMQKCPRCEGHGFIKTTQATALTILRKIRAEAIKEDTNEIRVQVPVDIAAYILNEKRDSIVEIERISQVKVMIIPNFNMESPKFQMQRIWGTSYKSNRTSSELIEDVYNIEIPKAGKKKIAAVDLNQAIENQAASNTQEQKPQTDAQVDIVTQNDKKQDDVTQQAKKKGFFARLFSGIFATDSKAAQQANNSAQKQQNKEQNFQRQQQHNKAQKDNNQRNERNNSNNKNERNKNRNNKGAKPQIAQENKPQKDNSQRSDLNANGNSNNDKNERNKNKSNNDKFDKKSNNRNSRSNNLNLNNAEEVIDITQLKYQNQTAIAKTDNIKKVISKNPDEFISVMVKDVLENYDSLKDDGATKIATQEKIKTNKYLKFDTVSVDTEIALLNEVAKSNQTVGVEQITAETEESLSIVDKVDDITIPEVVVEQEKPAKVVKETNQTSEAKPKKEKQTTTKNNKKEKPAEKEMKQNQAKPEYINYSPAIDFESQTLI GT:EXON 1|1-885:0| BL:SWS:NREP 1 BL:SWS:REP 1->577|RNE_HAEIN|e-145|48.4|564/935| SEG 579->634|skaaqqannsaqkqqnkeqnfqrqqqhnkaqkdnnqrnernnsnnknernknrnnk| SEG 659->697|ngnsnndknernknksnndkfdkksnnrnsrsnnlnlnn| SEG 837->863|eakpkkekqtttknnkkekpaekemkq| BL:PDB:NREP 1 BL:PDB:REP 1->485|2c4rL|e-135|53.3|469/491| RP:PDB:NREP 1 RP:PDB:REP 1->502|2c0bL|3e-46|47.9|474/488| RP:PFM:NREP 3 RP:PFM:REP 37->115|PF00575|1e-07|40.8|71/74|S1| RP:PFM:REP 118->389|PF10150|1e-66|50.9|269/271|RNase_E_G| RP:PFM:REP 395->428|PF03506|6e-04|44.1|34/162|Flu_C_NS1| HM:PFM:NREP 3 HM:PFM:REP 118->389|PF10150|1.1e-98|49.4|269/271|RNase_E_G| HM:PFM:REP 36->115|PF00575|9.9e-14|26.4|72/74|S1| HM:PFM:REP 395->428|PF03506|0.00021|41.2|34/162|Flu_C_NS1| GO:PFM:NREP 1 GO:PFM GO:0003723|"GO:RNA binding"|PF00575|IPR003029| RP:SCP:NREP 2 RP:SCP:REP 40->122|1smxA|2e-29|66.3|83/87|b.40.4.5| RP:SCP:REP 103->191|1a6fA|5e-17|21.3|89/113|d.14.1.2| HM:SCP:REP 39->122|1smxA_|3.7e-16|35.7|84/0|b.40.4.5|1/1|Nucleic acid-binding proteins| OP:NHOMO 1026 OP:NHOMOORG 724 OP:PATTERN -------------------------------------------------------------------- 1111111111111111111-1111111111111111111111111111111111111111111111111111111111-----11111111111111--1111111111111111111111111111111111111----------1111111111111111111111111111111111111-------1---11111111111111111----111-----1111111111------------------------------------------------------------------------------------------11111111111111111111111111--111111111111-111111-1-1111111-1111111111111111111111111111-1111111111211111111111111122211111111111111111111112121111111111111111111111111111111111112222222232222222222222222222222221222222222222222222222222222222222222212222111111111122222222211111112-------------------------222222222222222222222222222222221-2222211-11122222222222222222-222222222222212222222222222222222222222222222222222212222222222221122111111111212222222222222122222222222222222222222222222222222222222222222222222222222222222222222111-------------------------------------------1111111111111 --------------------------------------------------------------------------------------------------------------------------------------------------------------1----2------1-------11122--1111-41------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 508 STR:RPRED 57.4 SQ:SECSTR cEEEEEEcccTTcEEEEEEETTEEEEEEEEcccccccTTcEEEEEcccccTTTTccEccccccccccccGGGcccTTcccccHHHHcHHHHcTTcEEEEEEEEcccTTcccEEEccccEEcccEEEcTTccccccccTTccHHHHHHTcccccEEcTTGGGccHHHHHHHHHHHHHHHHHHTTccccccEEEEccccHHHccEEEEccccHHHHHHHcccTTEEEEEEccHHHHHHHHHHHHTTTcGGGGGGEEEccccccHHHHTTcHHHHHHTTccEEEcTTccEEEEEEccccEEEEEEcccccHHccHHHHHHHHHHHHHHHHHHHHHHTTccEEEEEEccccccHHHHHHHHHHHHHHTccccccEEcccccTTcEEEEEEccccccHHHHccccccccccccccccHHHHHHHHHHHHHHHHHcTTEEEEEEEEEHHHHHHHTTTTHHHHHHHHHTTTcEEEEEEETTccTTccEEEEEcETTTcccccGGGHHHHHHTTTc######################################################################################################################################################################################################################################################################################################################################################################################### DISOP:02AL 885-886| PSIPRED ccEEEEEcccccEEEEEEEEccEEEEEEEcccccccccccEEEEEEEEEcccccEEEEEEcccccEEEEHHHccHHHHHcccccccHHHHcccccEEEEEEEcccccccccccEEEEEEcccEEEEcccccccEEEEEEccHHHHHHHHHHHHHHcccccccEEEEEccccccHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEccccHHHHHHHHHHccHHcEEEEccHHHHHHHHHHHHHHcccccccEEEEccccccHHHHccHHHHHHHHHccEEEcccccEEEEEccccEEEEEEccccccccccHHHHHHHHHHHHHHHHHHHHHHcccccEEEEEccccccHHHHHHHHHHHHHHHHHccccEEEcccccccEEEEEcccccccHHHHHccccccccccEEEEEHHHHHHHHHHHHHHHHHHccccEEEEEEcHHHHHHHHHccHHHHHHHHHHHccEEEEEEcccccccccEEcccccccccccccccHHHHccccHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHcccccccccccccccccccccccccccccccccccccccccccHHcccccccccccccccccccccccccccccccccccccccHHcccccccccccHHcccccccccccccccccccccccccccccccccccccHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc //