[GTOP] [HELP] [ORGANISMS] [SEARCH] [SUMMARY]
Francisella tularensis subsp. mediasiatica FSC147 (ftul2)
Gene : rnhA
DDBJ      :rnhA         Ribonuclease H
Swiss-Prot:RNH_FRATW    RecName: Full=Ribonuclease H;         Short=RNase H;         EC=3.1.26.4;

Homologs  Archaea  0/68 : Bacteria  638/915 : Eukaryota  125/199 : Viruses  3/175   --->[See Alignment]
c.55.3
:152 amino acids
:SECSTR
:PSIPRED
:BLT:PDB   9->145 1lavA PDBj 3e-45 56.2 %
:RPS:PDB   10->146 2e4lA PDBj 6e-28 47.4 %
:RPS:SCOP  9->148 1f21A  c.55.3.1 * 1e-48 53.6 %
:HMM:SCOP  7->147 1rilA_ c.55.3.1 * 2.4e-55 53.2 %
:RPS:PFM   13->144 PF00075 * RnaseH 6e-20 48.8 %
:HMM:PFM   8->146 PF00075 * RnaseH 5.6e-41 39.1 128/131  
:BLT:SWISS 1->152 RNH_FRATW 5e-90 100.0 %

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID ACD30648.1 GT:GENE rnhA GT:PRODUCT Ribonuclease H GT:DATABASE GIB00719CH01 GT:ORG ftul2 GB:ACCESSION GIB00719CH01 GB:LOCATION 730309..730767 GB:FROM 730309 GB:TO 730767 GB:DIRECTION + GB:GENE rnhA GB:PRODUCT Ribonuclease H GB:PROTEIN_ID ACD30648.1 GB:DB_XREF GI:187712351 GB:GENE:GENE rnhA LENGTH 152 SQ:AASEQ MEIFKKKNRVIAYTDGACKGNPGIGGWGAILSYNGVDKEIYGSEKDTTNNRMELMAAIKTLQALKRKCDITIYTDSKYLQNGINEWLANWKANGWKTAAKKEVKNKDLWQELDSLTNKHNVTWGWVKGHSGNAGNEKADELANKAIAELIGK GT:EXON 1|1-152:0| SW:ID RNH_FRATW SW:DE RecName: Full=Ribonuclease H; Short=RNase H; EC=3.1.26.4; SW:GN Name=rnhA; OrderedLocusNames=FTW_1139; SW:KW Complete proteome; Cytoplasm; Endonuclease; Hydrolase; Magnesium;Metal-binding; Nuclease. SW:EXACT T SW:FUNC + BL:SWS:NREP 1 BL:SWS:REP 1->152|RNH_FRATW|5e-90|100.0|152/152| GO:SWS:NREP 5 GO:SWS GO:0005737|"GO:cytoplasm"|Cytoplasm| GO:SWS GO:0004519|"GO:endonuclease activity"|Endonuclease| GO:SWS GO:0016787|"GO:hydrolase activity"|Hydrolase| GO:SWS GO:0046872|"GO:metal ion binding"|Metal-binding| GO:SWS GO:0004518|"GO:nuclease activity"|Nuclease| BL:PDB:NREP 1 BL:PDB:REP 9->145|1lavA|3e-45|56.2|137/155| RP:PDB:NREP 1 RP:PDB:REP 10->146|2e4lA|6e-28|47.4|137/155| RP:PFM:NREP 1 RP:PFM:REP 13->144|PF00075|6e-20|48.8|123/132|RnaseH| HM:PFM:NREP 1 HM:PFM:REP 8->146|PF00075|5.6e-41|39.1|128/131|RnaseH| GO:PFM:NREP 2 GO:PFM GO:0003676|"GO:nucleic acid binding"|PF00075|IPR002156| GO:PFM GO:0004523|"GO:ribonuclease H activity"|PF00075|IPR002156| RP:SCP:NREP 1 RP:SCP:REP 9->148|1f21A|1e-48|53.6|140/152|c.55.3.1| HM:SCP:REP 7->147|1rilA_|2.4e-55|53.2|141/0|c.55.3.1|1/1|Ribonuclease H-like| OP:NHOMO 877 OP:NHOMOORG 766 OP:PATTERN -------------------------------------------------------------------- --111----------------1---1------11111111-1---1-111111111-111--111-1111-11111--1111--1111--------1--1-111-11-21---------------1111111111111111---1-111111-11111111111111111111111111111122111---1---------------------------------------11---------------------111111-111111111-11--------------------------------------------------1---11111111-1-1-------1-1-11-111--11-111-11111---1-1111111111111112121111111111111111-211211111111222121222212221111111111111111111111111111111111111111111-111111111111121111111111111111111111111111111112111111111111111111111111111111111111111112121211111111111122211122211111-1111111111111111111111111112111111--111111111222111121221221-1111111----11111111111111111-11111111111111111111111111111111111111211111111111111111111111111111111111111111111111111111111111111111111-1111111111211111111111111111112122112113314111111111111111111--------------11--------------------------------------- ----------11111--21112112111111-11--12-21121-1121211321-131111711----21-311-----122113-1--21-11211--1-1-------133111-111111111111151-12-111-1-11--11--1-11-111212-1314121-A1212-------------1-----3112- ---------------------1------------------------------------------------------------------------------------------------------------------------------------------1---------1---- STR:NPRED 150 STR:RPRED 98.7 SQ:SECSTR ccccccTTcEEEEEEEEEccccEEEEEEEEEEETTEEEEEEEEEEEEcHHHHHHHHHHHHHHTcccccEEEEEEccHHHHHHHHTHHHHHHHTTTccTTccccTTHHHHHHHHHHHTTcEEEEEEccTTcccHHHHHHHHHHHHHHcHcc## PSIPRED cccccccccEEEEEcccccccccccEEEEEEEEccEEEEEccccccccHHHHHHHHHHHHHHHccccccEEEEEcHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHccEEEEEEccccccHHHHHHHHHHHHHHHHHHcc //