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Francisella tularensis subsp. mediasiatica FSC147 (ftul2)
Gene : rplD
DDBJ      :rplD         50S ribosomal protein L4
Swiss-Prot:RL4_FRATM    RecName: Full=50S ribosomal protein L4;

Homologs  Archaea  0/68 : Bacteria  906/915 : Eukaryota  139/199 : Viruses  0/175   --->[See Alignment]
c.22.1
:207 amino acids
:SECSTR
:PSIPRED
:BLT:PDB   15->206 1vs6E PDBj 2e-62 58.4 %
:RPS:PDB   1->206 3bboG PDBj 2e-55 27.5 %
:RPS:SCOP  5->206 1vs6E1  c.22.1.1 * 6e-43 55.5 %
:HMM:SCOP  1->206 1dmgA_ c.22.1.1 * 1.7e-67 46.6 %
:RPS:PFM   18->204 PF00573 * Ribosomal_L4 4e-38 44.4 %
:HMM:PFM   20->205 PF00573 * Ribosomal_L4 4.9e-66 50.5 184/192  
:BLT:SWISS 1->207 RL4_FRATM e-113 100.0 %

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID ACD31348.1 GT:GENE rplD GT:PRODUCT 50S ribosomal protein L4 GT:DATABASE GIB00719CH01 GT:ORG ftul2 GB:ACCESSION GIB00719CH01 GB:LOCATION complement(1637199..1637822) GB:FROM 1637199 GB:TO 1637822 GB:DIRECTION - GB:GENE rplD GB:PRODUCT 50S ribosomal protein L4 GB:PROTEIN_ID ACD31348.1 GB:DB_XREF GI:187713051 GB:GENE:GENE rplD LENGTH 207 SQ:AASEQ MDLNIKSLAGQEAGSLGVAEGVFAADYNEALIHQVVVAYMAGARQGTKAQKTRSEVSGGGAKPWRQKGTGRARAGTIRSPIFRKGGVTFAAKPKSYKQKVNRKMYSGAVKSILSELLRLGRMTIVEELKLETPKTREFKSVIDSLGVKDVLFVVGVEEFSENLYLSSRNLKNVAVCDSVEINPVSLVCFENVVLTKKAIKEIEEKLV GT:EXON 1|1-207:0| SW:ID RL4_FRATM SW:DE RecName: Full=50S ribosomal protein L4; SW:GN Name=rplD; OrderedLocusNames=FTM_1526; SW:KW Complete proteome; Ribonucleoprotein; Ribosomal protein; RNA-binding;rRNA-binding. SW:EXACT T SW:FUNC + BL:SWS:NREP 1 BL:SWS:REP 1->207|RL4_FRATM|e-113|100.0|207/207| GO:SWS:NREP 4 GO:SWS GO:0030529|"GO:ribonucleoprotein complex"|Ribonucleoprotein| GO:SWS GO:0005840|"GO:ribosome"|Ribosomal protein| GO:SWS GO:0003723|"GO:RNA binding"|RNA-binding| GO:SWS GO:0019843|"GO:rRNA binding"|rRNA-binding| BL:PDB:NREP 1 BL:PDB:REP 15->206|1vs6E|2e-62|58.4|190/201| RP:PDB:NREP 1 RP:PDB:REP 1->206|3bboG|2e-55|27.5|204/211| RP:PFM:NREP 1 RP:PFM:REP 18->204|PF00573|4e-38|44.4|187/190|Ribosomal_L4| HM:PFM:NREP 1 HM:PFM:REP 20->205|PF00573|4.9e-66|50.5|184/192|Ribosomal_L4| GO:PFM:NREP 4 GO:PFM GO:0003735|"GO:structural constituent of ribosome"|PF00573|IPR002136| GO:PFM GO:0005622|"GO:intracellular"|PF00573|IPR002136| GO:PFM GO:0005840|"GO:ribosome"|PF00573|IPR002136| GO:PFM GO:0006412|"GO:translation"|PF00573|IPR002136| RP:SCP:NREP 1 RP:SCP:REP 5->206|1vs6E1|6e-43|55.5|200/201|c.22.1.1| HM:SCP:REP 1->206|1dmgA_|1.7e-67|46.6|204/225|c.22.1.1|1/1|Ribosomal protein L4| OP:NHOMO 1113 OP:NHOMOORG 1045 OP:PATTERN -------------------------------------------------------------------- 1111111111111111111-11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111-111111111111111111111111111111111111111-11111111111111111111--111111111111111111111111111111111111111111111111111111111111111111111121111111111111111111111111111-11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111-1111111111111111111111111111-11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111112111111111111111111-11111111111111111111111111111111 ----111-------111111111111111-1111111111-1111111111111-1111111------------------------11-1211111---1-11112-12123111111-1-11121111353-111-11111111--1--1--11--11--1121-11119-1212222G2222143531321121112 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 206 STR:RPRED 99.5 SQ:SECSTR EEEEccccccccccEEEEccccccccccTTTTTTHHHHHHHHHccccccccccTTcccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHTTccccccGGGTTccccHHHHTTHHHHcccccccEEcEEcccccccTTTccccccEEcccccccHHHHHHcccEEccTTHHHHHHHHc# PSIPRED cccEEEcccccEEccEEccHHHHcccccHHHHHHHHHHHHHHcccccccccccHHccccccccccccccccccccccccccccccEEccccccccccccccHHHHHHHHHHHHHHHHHcccEEEEEccccccccHHHHHHHHHHcccccEEEEEEccccccHHHHHHccccccEEEEcccccHHHHHccccEEEEHHHHHHHHHHHc //