[GTOP] [HELP] [ORGANISMS] [SEARCH] [SUMMARY]
Francisella tularensis subsp. mediasiatica FSC147 (ftul2)
Gene : rpoB
DDBJ      :rpoB         DNA-directed RNA polymerase, beta subunit
Swiss-Prot:RPOB_FRATM   RecName: Full=DNA-directed RNA polymerase subunit beta;         Short=RNAP subunit beta;         EC=2.7.7.6;AltName: Full=Transcriptase subunit beta;AltName: Full=RNA polymerase subunit beta;

Homologs  Archaea  68/68 : Bacteria  905/915 : Eukaryota  193/199 : Viruses  2/175   --->[See Alignment]
e.29.1
:1358 amino acids
:SECSTR
:PSIPRED
:BLT:PDB   13->225,357->925,1055->1349 1i6vC PDBj e-163 51.9 %
:BLT:PDB   247->320 3e7hB PDBj 6e-09 35.6 %
:RPS:PDB   7->1101 3cqzB PDBj 0.0 15.6 %
:RPS:PDB   1107->1194 3cd5C PDBj 9e-04 21.4 %
:RPS:PDB   1191->1348 3dxkB PDBj 5e-23 24.8 %
:RPS:SCOP  141->1358 1i3qB  e.29.1.1 * 0.0 18.7 %
:HMM:SCOP  2->1359 1i50B_ e.29.1.1 * 0 45.8 %
:RPS:PFM   27->230,364->509 PF04563 * RNA_pol_Rpb2_1 8e-50 53.8 %
:RPS:PFM   516->584 PF04565 * RNA_pol_Rpb2_3 2e-30 77.9 %
:RPS:PFM   594->659 PF10385 * RNA_pol_Rpb2_45 1e-16 62.1 %
:RPS:PFM   731->936 PF00562 * RNA_pol_Rpb2_6 2e-71 65.3 %
:RPS:PFM   950->1032 PF06548 * Kinesin-related 8e-04 32.5 %
:RPS:PFM   1278->1347 PF04560 * RNA_pol_Rpb2_7 1e-05 44.3 %
:HMM:PFM   718->1276 PF00562 * RNA_pol_Rpb2_6 3.3e-160 60.0 385/386  
:HMM:PFM   27->512 PF04563 * RNA_pol_Rpb2_1 7.7e-33 32.6 181/229  
:HMM:PFM   516->585 PF04565 * RNA_pol_Rpb2_3 1.1e-31 60.3 68/68  
:HMM:PFM   1278->1352 PF04560 * RNA_pol_Rpb2_7 4.8e-29 54.7 75/83  
:HMM:PFM   594->659 PF10385 * RNA_pol_Rpb2_45 1.7e-28 54.5 66/66  
:BLT:SWISS 1->1358 RPOB_FRATM 0.0 100.0 %
:PROS 1077->1089|PS01166|RNA_POL_BETA

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID ACD30289.1 GT:GENE rpoB GT:PRODUCT DNA-directed RNA polymerase, beta subunit GT:DATABASE GIB00719CH01 GT:ORG ftul2 GB:ACCESSION GIB00719CH01 GB:LOCATION 227542..231618 GB:FROM 227542 GB:TO 231618 GB:DIRECTION + GB:GENE rpoB GB:PRODUCT DNA-directed RNA polymerase, beta subunit GB:PROTEIN_ID ACD30289.1 GB:DB_XREF GI:187711992 GB:GENE:GENE rpoB LENGTH 1358 SQ:AASEQ MSYSYAEKKRIRKEFGVLPHILDVPYLLSIQTESYKKFLTADAAKGRLHSGLEIVLKQSFPVESKNGQYELHYVDYQIGEPTFDETECQVRGATYDAPLNVKLRLVVYNKDALPNEKIVEDIREEYVYMGDIPLMTTNGTFIINGTERVVVSQLHRSPGVFFSKDDSEEGAFSARIIPYRGSWLDFEFDSKGIIWARIDRKRKFCATVILKALGYTQEQILENFSESKTITSNSKGFALRLDSLSNMKGELLKFDIVDAQDYVIVKKNKKLTSRDVKKIKDAGVDSVAIDFDLVSTLRVAKDIVNEATGEVIAYANDDVTESLLESCVEVGLLELEVIDFITTERGRYISDTLKYDLTRNTDEALVEIYKVLRPGDPPAAASVKALFEGLFFIESRYSLSDIGRMKLNARLGSDKVSKDIYTLENSDIVGVIEELINIRDGKGKVDDIDHLGNRRVRSVGEMVENQFRIGLYRVEKGIRESMSLVHKDKLMPKDIVNSKPITAAIKEFFTSGALSQFMDQDNPLSEVTHKRRISALGPGGLSRDRAGFEVRDVHATHYGRLCPIETPEGPNIGLINSLASYARVNDYGFLEAPYRKVVDGKVTDEIEYLSAIDEDNYVIAQASTKLDENNYFVEDLIQCRSGGEAIFTESSRVQYMDVSAKQMVSAAAALIPFLEHDDANRVLMGANMQRQAVPTLKSEKPLVGTGMEKIVARDSGNCIIARNAGEVAEVDSNRIVIKVDTEKSQTSNLVDIYSLTKFKRSNKNTCINQRPIVNVGDKVEAGDILADGFAADFGELSLGHNLMVAFMPWNGYNFEDSILLSERIVKDDKYTSIHIEEFTCVARDTKLGPEEITADIPNVSESSLAKLDESGIVHIGANVEAGDILVAKITPKAEQQLTPEERLLRAIFNEKASNVADSSLRMPSGTSGTVINVQVFENDKGGKSKRALKIEKELIDKARKDFDEEFAVIESVVKSSIEQEVVGAKIQKAKGLKKGAILTKEFLATLPFSKWLEISFEDEKLEEKVQNAREYYEEAKIAIDAKFEAKKKSITQSNELSPGVLKTVKVFVAIKKRIQPGDKMAGRHGNKGVVSRVLPVEDMPYMEDGTPVDVCLNPLGIPSRMNIGQILEAHLGLASYGLGKKIEKTLEKTRKAAELRKTLEEIYNSVGDKKVNLEALNDEEILTLCDNLKGGVPIATPVFDGAKEEDIKSLLKIGGFATNGQMKLFDGRTGKPFDRHVTVGYMYMLKLDHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALQAYGAAYTLREMLTVKSDDIAGRSKMYKNIVDGKLTMNVDVPESFNVLRNEVRALGIDMDFDYSSEEE GT:EXON 1|1-1358:0| SW:ID RPOB_FRATM SW:DE RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; EC=2.7.7.6;AltName: Full=Transcriptase subunit beta;AltName: Full=RNA polymerase subunit beta; SW:GN Name=rpoB; OrderedLocusNames=FTM_0209; SW:KW Complete proteome; DNA-directed RNA polymerase;Nucleotidyltransferase; Transcription; Transferase. SW:EXACT T SW:FUNC + BL:SWS:NREP 1 BL:SWS:REP 1->1358|RPOB_FRATM|0.0|100.0|1358/1358| GO:SWS:NREP 4 GO:SWS GO:0003899|"GO:DNA-directed RNA polymerase activity"|DNA-directed RNA polymerase| GO:SWS GO:0016779|"GO:nucleotidyltransferase activity"|Nucleotidyltransferase| GO:SWS GO:0006350|"GO:transcription"|Transcription| GO:SWS GO:0016740|"GO:transferase activity"|Transferase| PROS 1077->1089|PS01166|RNA_POL_BETA|PDOC00896| BL:PDB:NREP 2 BL:PDB:REP 13->225,357->925,1055->1349|1i6vC|e-163|51.9|1046/1113| BL:PDB:REP 247->320|3e7hB|6e-09|35.6|73/101| RP:PDB:NREP 3 RP:PDB:REP 7->1101|3cqzB|0.0|15.6|948/1061| RP:PDB:REP 1107->1194|3cd5C|9e-04|21.4|84/418| RP:PDB:REP 1191->1348|3dxkB|5e-23|24.8|153/211| RP:PFM:NREP 6 RP:PFM:REP 27->230,364->509|PF04563|8e-50|53.8|331/364|RNA_pol_Rpb2_1| RP:PFM:REP 516->584|PF04565|2e-30|77.9|68/69|RNA_pol_Rpb2_3| RP:PFM:REP 594->659|PF10385|1e-16|62.1|66/66|RNA_pol_Rpb2_45| RP:PFM:REP 731->936|PF00562|2e-71|65.3|199/386|RNA_pol_Rpb2_6| RP:PFM:REP 950->1032|PF06548|8e-04|32.5|83/469|Kinesin-related| RP:PFM:REP 1278->1347|PF04560|1e-05|44.3|70/86|RNA_pol_Rpb2_7| HM:PFM:NREP 5 HM:PFM:REP 718->1276|PF00562|3.3e-160|60.0|385/386|RNA_pol_Rpb2_6| HM:PFM:REP 27->512|PF04563|7.7e-33|32.6|181/229|RNA_pol_Rpb2_1| HM:PFM:REP 516->585|PF04565|1.1e-31|60.3|68/68|RNA_pol_Rpb2_3| HM:PFM:REP 1278->1352|PF04560|4.8e-29|54.7|75/83|RNA_pol_Rpb2_7| HM:PFM:REP 594->659|PF10385|1.7e-28|54.5|66/66|RNA_pol_Rpb2_45| GO:PFM:NREP 14 GO:PFM GO:0003677|"GO:DNA binding"|PF04563|IPR007644| GO:PFM GO:0003899|"GO:DNA-directed RNA polymerase activity"|PF04563|IPR007644| GO:PFM GO:0006350|"GO:transcription"|PF04563|IPR007644| GO:PFM GO:0003677|"GO:DNA binding"|PF04565|IPR007645| GO:PFM GO:0003899|"GO:DNA-directed RNA polymerase activity"|PF04565|IPR007645| GO:PFM GO:0006350|"GO:transcription"|PF04565|IPR007645| GO:PFM GO:0003899|"GO:DNA-directed RNA polymerase activity"|PF10385|IPR019462| GO:PFM GO:0006351|"GO:transcription, DNA-dependent"|PF10385|IPR019462| GO:PFM GO:0003677|"GO:DNA binding"|PF00562|IPR007120| GO:PFM GO:0003899|"GO:DNA-directed RNA polymerase activity"|PF00562|IPR007120| GO:PFM GO:0006350|"GO:transcription"|PF00562|IPR007120| GO:PFM GO:0003677|"GO:DNA binding"|PF04560|IPR007641| GO:PFM GO:0003899|"GO:DNA-directed RNA polymerase activity"|PF04560|IPR007641| GO:PFM GO:0006350|"GO:transcription"|PF04560|IPR007641| RP:SCP:NREP 1 RP:SCP:REP 141->1358|1i3qB|0.0|18.7|1006/1083|e.29.1.1| HM:SCP:REP 2->1359|1i50B_|0|45.8|976/1207|e.29.1.1|1/1|beta and beta-prime subunits of DNA dependent RNA-polymerase| OP:NHOMO 1739 OP:NHOMOORG 1168 OP:PATTERN 11111111111111211111111222222222222222222222224222222211111111111211 1111111111111111111-11111111111111112111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111112111111111111111111111111111111111111111-111111111111111111111111111111111111111111111111111111111111111111111111111111111111111112111111111111111112111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111121111111111111111111111111111111111111111111111111111111111111111111-1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111--1-1111-11111111111111111111-11111111111111111111111111111111111111111111111111111111-11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111-11111111111111111111111111111111 33233323622333233233333333333332333343434433333322232333333333333333-33333333-3333333333-35333333333333335336343534241333333342637Z3-5443332333423312-32353434337G5334333-533644333e33323C5683593343334 --------------------------------------------------------------------------------------------------------------------------------------------------------------------------1-1-- STR:NPRED 1352 STR:RPRED 99.6 SQ:SECSTR ######cccccTTHHHHHHHHHHHHcccHHHHHHHHHHHHccccTcccGTHHHHHHHTccccccEEEEEEEcccccccccEEccHHHHHHTTcccEEEEEEEEEccccccccccEEcccccccccccEEEEEEccTTcTTcGGGGccHHHHHHTTccTTccccEEEEEEcEEcccEEETTEEEEEcEEEEEcccccEEEEccTTccEEEEEEEEEccccccEEEccEEEEEEHHHHHTTHHHHHTcEEEcccccccccEEEEEEEEccccccccEEEEEcTccccccEEEEcEEcccTccTTccccEEHHHHHHHTTcccHHTTGGGTccHHHHHHcccTTcHHHHHTTHHHHHHTTTccHHHHHHHHHHTTccTTccHHHHHHHHHHHHHHHTccTTTccccccHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHTTccccccTTcGGGEEEEcHHHHHHHHHHHHHHHHHTGGGcccccccHHHHHHHHHccTHHHHHHHHHHHHHTccEEEcccccHHHHHHHHTEEEcHHHHccccccccccTTcccGGGTTTcccccccccTTTTTEEEccTTcEEcccccccHHHHHHHHHETTTccGGGcTTcEEEEETTEEEEEEccHHHHHHHHHHHHTTTccccTTcEEEEETTTTEEEEEccTTcEEEEEEEccTTTcccEEcccHHHHHHHHHHHHTccccccHHHHHHTTcEEEEETTGGGGccEEccGGGGccEcccGGGGcHHHHHHGGGccccccTTGGGccccEEEEEcccccccEEcTTHHTTTccccEEEEEEEcccTTTTcTTEEEEEHHHHHTTTTcEEEEEEEEEEccccccEEccccTTcccccccccTTccTTccccTTcEEETTcEEEcEEEcccEEccEEccTTcEEEEEEEEEEEcccccEEcTTcEEEEEEEEEEEEEcccTTcEEEcTTccEEEEEEEEcGGGccccTTcccccEEEcGGGcTTTTcHHHHHHHHHHTccEEccTTcTTcEEccccTTTcccccccEEEEEEEEEEccccccccccHHHHHHHHHTTcHHHHHHHHcccccccccccccccccccccccccEEEEEEcHTccccccHHHHHHHccGGGTccccccHHHHHHHHHTcHHHHHTTTTTcccEEEEEEcccccTTccccTTTTcccTcccccHHHHHHTTcccccccHHHHHHEcTTTcEEEcccHHHHccccccccTTTTcccccccccEEccccccccccTTccccccccccccccccccccccccccccccTHHHHHHHHcccHHHHHGGGcTTTTcHHHHHHHHHHHHTTccccccccHHHHHHHHHHTTccccccccccTTTcc PSIPRED ccccccccEEEEEEEEEcccccccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHcccccccccEEEEEEEEEEEEcccccHHHHHHccccEEEEEEEEEEEEEEccccccccEEEccccHHHEEEccccccccccEEEEccEEEEEEEEccccccEEEEEccccccEEEEEEEEccccEEEEEEccccEEEEEEccccccEEEEEEHHccccHHHHHHHHccccEEEEcccccEEEEcccccHHHHHHHHHHHcccccEEEcccccccHHHHHHHHHccccEEEEcHHHHHcHHHHHccccccccEEEEcccccccHHHHHHHHHcccccEEEEEEEcccccHHHcccccccccccHHHHHHHHHHHHcccccccHHHHHHHHHHHcccHHHcccccccHHHHHHHHcccccccccEEEcHHHHHHHHHHHHHHHcccccccccccHHHEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccEEEEcccHHHHHHHHHHHccccEEEcccccHHHHHHHHHHHcccccccccccccccccccccccccEEEEEccccccccccHHHHccccEEcccccccccHHHHHHHcccccccEEccccccccEEEEEccccccccccEEccEEEEEccccEEEcccEEEEEEEccccEEEEEEEEEEEEEEcccccccHHHHHHHHHHHcccccccccccccHHHHHHHHcccEEEEccccEEEEEcccEEEEEEccccccccccccccccccccccccccccccccccccccEEEccEEEEEccccccccccccEEEEEEEEcccccccEEEEEEcHHHHHcccEEEEEEEEEEEEEEEcccccHHEEcccccccHHHHHHHHHccccccccEEccccEEEEEEEcccccccccHHHHHHHHcccccccEEEEEEEEcccccEEEEEEEEEEccccccccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHcccccccccccccEEccccccHHHHccccHHHHHHHHcccHHHHHHHHHHcccccccEEEEEEEEEEEEEccccccccccccEEEEEEEEEEEcccccccccccccccccEEEEEEEHHHccccccccEEEEEEccccccccccHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHcccEEEcccccccccHHHHHHHHHHccccccccEEEEccccccEEcccEEEEHHHHHHHHHHHcccEEEEEcccHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHHHcccccccEEEcHHEEEcccccccccccccHHHHHHHHHHHHccccEEEEEccccc //