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Francisella tularensis subsp. mediasiatica FSC147 (ftul2)
Gene : rpoC
DDBJ      :rpoC         DNA-directed RNA polymerase, beta' subunit
Swiss-Prot:RPOC_FRATM   RecName: Full=DNA-directed RNA polymerase subunit beta';         Short=RNAP subunit beta';         EC=2.7.7.6;AltName: Full=Transcriptase subunit beta';AltName: Full=RNA polymerase subunit beta';

Homologs  Archaea  68/68 : Bacteria  906/915 : Eukaryota  195/199 : Viruses  2/175   --->[See Alignment]
b.84.3e.29.1
:1417 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   18->1019 2ghoD PDBj 0.0 49.2 %
:BLT:PDB   1087->1350 2a6hD PDBj 1e-56 47.2 %
:RPS:PDB   14->196 2ab4A PDBj 3e-22 10.8 %
:RPS:PDB   229->1061 1ddqD PDBj 0.0 45.5 %
:RPS:PDB   1134->1277 3csqD PDBj 1e-14 10.0 %
:RPS:SCOP  13->1019 2ghoD1  e.29.1.2 * 0.0 48.0 %
:RPS:SCOP  1135->1205 1qwyA  b.84.3.2 * 7e-10 18.6 %
:HMM:SCOP  3->1351 1i50A_ e.29.1.2 * 0 44.7 %
:RPS:PFM   16->339 PF04997 * RNA_pol_Rpb1_1 2e-68 49.5 %
:RPS:PFM   342->484 PF00623 * RNA_pol_Rpb1_2 1e-35 51.0 %
:RPS:PFM   487->642 PF04983 * RNA_pol_Rpb1_3 2e-18 40.7 %
:RPS:PFM   678->747 PF05000 * RNA_pol_Rpb1_4 1e-10 44.3 %
:RPS:PFM   763->1310 PF04998 * RNA_pol_Rpb1_5 2e-65 36.9 %
:HMM:PFM   13->340 PF04997 * RNA_pol_Rpb1_1 5.6e-100 40.0 310/338  
:HMM:PFM   763->1309 PF04998 * RNA_pol_Rpb1_5 4.7e-73 34.7 274/277  
:HMM:PFM   342->484 PF00623 * RNA_pol_Rpb1_2 1e-51 46.9 143/166  
:HMM:PFM   487->642 PF04983 * RNA_pol_Rpb1_3 7.8e-30 32.6 135/157  
:HMM:PFM   671->748 PF05000 * RNA_pol_Rpb1_4 1.6e-20 28.6 77/108  
:BLT:SWISS 1->1417 RPOC_FRATM 0.0 100.0 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID ACD30290.1 GT:GENE rpoC GT:PRODUCT DNA-directed RNA polymerase, beta' subunit GT:DATABASE GIB00719CH01 GT:ORG ftul2 GB:ACCESSION GIB00719CH01 GB:LOCATION 231680..235933 GB:FROM 231680 GB:TO 235933 GB:DIRECTION + GB:GENE rpoC GB:PRODUCT DNA-directed RNA polymerase, beta' subunit GB:PROTEIN_ID ACD30290.1 GB:DB_XREF GI:187711993 GB:GENE:GENE rpoC LENGTH 1417 SQ:AASEQ MNNGILHQNYNSKKFDIIKISLASPEVIRSWSHGEVKKPETINYRTFKPERDGLFCAKIFGPIKDYECLCGKYKRLKHRGVVCERCGVEVEQAKVRRERMGHIDLVCPVVHIWYLKSLPSRIGLFLDMPLKNVEKVLYFESYIVTDPGMTPLEKKQLLTDEEYAEALENYGYEFEASMGAEAIRDLLADTDIESEIELLQAECEESKSTAKKEKAIKRLRLLETFQASGNKPEWMVMTVLPVLPPDLRPLVPIEGGRFATSDLNDLYRRVINRNNRLKKLLDLNAPDIIVRNEKRMLQEAVDALLDNGRRGRAVTGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPSLRLHECGLPKKMALELFKPFVYSKLRLGGHATTIKQAKRMVELEEAVVWDILETVINEHPVLLNRAPTLHRLGIQAFEPRLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLTVESQLEARVLMMSTNNILSPASGQPIITPTQDIVLGLYYITREKEGARGEGKLFSSYEDVSRAYNSGTIDIHAKIKLRIDRQVFDTKGNTYNEKGVVNTTVGRALLLNILPEGLSFSLLNKVLVKKEISKIINQAFRVLGGKATVVLADKLMYAGFKYSTLSGVSVGVDDMTIPDNKEAKIEEAEKEIKQITEQYQSSLITENERYNNIINIWSKTSDEVGASMMDAISKDTVSINGEKKEIESFNSVYMMAKSGARGSYNQMRQLAGMRGLMAKPDGTMIETAITANFREGLSVLQYFTSTHGARKGLADTALKTANAGYLTRRLVDVAQDLVVIEEDCGTDDGLMFSAIVEDGEVKVPLVERALGRTLAADVVTEKGVVLLEAGTLLDENLVELLDDNGIDMIKVRSPITCKTRRGLCAKCYGRDLARERQVNVGESVGVIAAQSIGEPGTQLTMRTFHTGGAASLGITVSDIKVKTAGKIKFKNIRTVTNKEGQEIVISRAGEIIVSDTMGRVREQHKIPMGAVVPLASGKAVEIGDVIATWDPHAQPLITDVAGKVVLEDVIDGITSKHTYDDLTGQQTIEITSISQRTTSKNLKPVVKIVDEKGAKLKSIPLAVGAVLNVADDSILEVGDIVAKIPLEGSKNKDITGGLPRVAELFEARRPKDAAILSPCDGMVRLGNRDTKEKQRIEIIDKNGHIVEEILLPKSRHLVVFDGEQVSRGDVLADGPTDPHDLLKYKGLEEFADYILIEAQSVYRMQGVVINDKHIETIVRQMLRKAVILDEGDSKFVKDESIELVRILEENDKLRKQGKKEVEYELVLMGITRSSLSTESFLSAASFQETTRVLTEASINSQIDNLRGLKENVLIGRLIPTGTGLAVRKESAKIEKMREELGVEDNMVFTDLSSFNPEEISFDSIQSQKEDKDINEDIEESLRNALESLDF GT:EXON 1|1-1417:0| SW:ID RPOC_FRATM SW:DE RecName: Full=DNA-directed RNA polymerase subunit beta'; Short=RNAP subunit beta'; EC=2.7.7.6;AltName: Full=Transcriptase subunit beta';AltName: Full=RNA polymerase subunit beta'; SW:GN Name=rpoC; OrderedLocusNames=FTM_0210; SW:KW Complete proteome; DNA-directed RNA polymerase;Nucleotidyltransferase; Transcription; Transferase. SW:EXACT T SW:FUNC + BL:SWS:NREP 1 BL:SWS:REP 1->1417|RPOC_FRATM|0.0|100.0|1417/1417| GO:SWS:NREP 4 GO:SWS GO:0003899|"GO:DNA-directed RNA polymerase activity"|DNA-directed RNA polymerase| GO:SWS GO:0016779|"GO:nucleotidyltransferase activity"|Nucleotidyltransferase| GO:SWS GO:0006350|"GO:transcription"|Transcription| GO:SWS GO:0016740|"GO:transferase activity"|Transferase| SEG 79->91|rgvvcercgveve| SEG 201->215|aeceeskstakkeka| SEG 239->252|vlpvlppdlrplvp| SEG 268->284|rrvinrnnrlkklldln| SEG 648->660|keakieeaekeik| SEG 859->871|lldenlvellddn| SEG 1395->1406|kedkdinediee| BL:PDB:NREP 2 BL:PDB:REP 18->1019|2ghoD|0.0|49.2|968/1196| BL:PDB:REP 1087->1350|2a6hD|1e-56|47.2|252/1381| RP:PDB:NREP 3 RP:PDB:REP 14->196|2ab4A|3e-22|10.8|176/300| RP:PDB:REP 229->1061|1ddqD|0.0|45.5|805/1077| RP:PDB:REP 1134->1277|3csqD|1e-14|10.0|130/326| RP:PFM:NREP 5 RP:PFM:REP 16->339|PF04997|2e-68|49.5|305/326|RNA_pol_Rpb1_1| RP:PFM:REP 342->484|PF00623|1e-35|51.0|143/166|RNA_pol_Rpb1_2| RP:PFM:REP 487->642|PF04983|2e-18|40.7|140/145|RNA_pol_Rpb1_3| RP:PFM:REP 678->747|PF05000|1e-10|44.3|70/107|RNA_pol_Rpb1_4| RP:PFM:REP 763->1310|PF04998|2e-65|36.9|469/471|RNA_pol_Rpb1_5| HM:PFM:NREP 5 HM:PFM:REP 13->340|PF04997|5.6e-100|40.0|310/338|RNA_pol_Rpb1_1| HM:PFM:REP 763->1309|PF04998|4.7e-73|34.7|274/277|RNA_pol_Rpb1_5| HM:PFM:REP 342->484|PF00623|1e-51|46.9|143/166|RNA_pol_Rpb1_2| HM:PFM:REP 487->642|PF04983|7.8e-30|32.6|135/157|RNA_pol_Rpb1_3| HM:PFM:REP 671->748|PF05000|1.6e-20|28.6|77/108|RNA_pol_Rpb1_4| GO:PFM:NREP 15 GO:PFM GO:0003677|"GO:DNA binding"|PF04997|IPR007080| GO:PFM GO:0003899|"GO:DNA-directed RNA polymerase activity"|PF04997|IPR007080| GO:PFM GO:0006350|"GO:transcription"|PF04997|IPR007080| GO:PFM GO:0003677|"GO:DNA binding"|PF00623|IPR000722| GO:PFM GO:0003899|"GO:DNA-directed RNA polymerase activity"|PF00623|IPR000722| GO:PFM GO:0006350|"GO:transcription"|PF00623|IPR000722| GO:PFM GO:0003677|"GO:DNA binding"|PF04983|IPR007066| GO:PFM GO:0003899|"GO:DNA-directed RNA polymerase activity"|PF04983|IPR007066| GO:PFM GO:0006350|"GO:transcription"|PF04983|IPR007066| GO:PFM GO:0003677|"GO:DNA binding"|PF05000|IPR007083| GO:PFM GO:0003899|"GO:DNA-directed RNA polymerase activity"|PF05000|IPR007083| GO:PFM GO:0006350|"GO:transcription"|PF05000|IPR007083| GO:PFM GO:0003677|"GO:DNA binding"|PF04998|IPR007081| GO:PFM GO:0003899|"GO:DNA-directed RNA polymerase activity"|PF04998|IPR007081| GO:PFM GO:0006350|"GO:transcription"|PF04998|IPR007081| RP:SCP:NREP 2 RP:SCP:REP 13->1019|2ghoD1|0.0|48.0|973/1196|e.29.1.2| RP:SCP:REP 1135->1205|1qwyA|7e-10|18.6|70/234|b.84.3.2| HM:SCP:REP 3->1351|1i50A_|0|44.7|1207/1449|e.29.1.2|1/1|beta and beta-prime subunits of DNA dependent RNA-polymerase| OP:NHOMO 1721 OP:NHOMOORG 1171 OP:PATTERN 11111111111111111111111111111111112111111111112111111111111111111111 1111111111111111111-1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111112222222222222222222222222222222222222111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111211111111111111111111111111112111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111-111111111111--1-1111-11111111111111111111111111111111111111111111111111111111111111111111111111111-11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111-11111111111111111111111111111111111111111111111111111111-11111111111111111111111111111111 35233313934233333232333333333222333333333333333333333233333333233333133233222-2233333233-34332323333333334335462533233313333562324J3-3453323333222323242153123235L633G3323G33634373W333-595293582253334 --------------------------------------------------------------------------------------------------------------------------------------------------------------------------1-1-- STR:NPRED 1351 STR:RPRED 95.3 SQ:SECSTR ###ccccccccccccccEEcccccHHHHHHHcccccccccccccTTcccccccccccccccccccccccccccTTccTTcEEcccTTccccTTTTcccccEEEEEEEEEcccTTHHHHHHHEETTTTEEcccTTccHHHHHTTcccHHHHHHHHGGGTcccccccccccccccccccccccccccEEEEccccEEEEcccEEcHHHHHHHHHccccTHHHHHccccTTccccccccccccccccccGccccccccccccGGGTTTTTcHHHHHHHHTTTcccccccTHHHHHHHHHHHHHHHHHTTccccccccccccccccccTTTTTTTccccccTTcccccccccEEEEEEEccccTTTcccccTTHHHHHHHHHHHHHHHHTcccccHHHHHHHTccccccHHTTHHHHTTTccEEccccccccGGGTcEEcccccccccEEEcTTTHHHHcccccccEEEEcccccGGGTTTTcccccTTTcccccTTccccccccTTTHHHHHHTccccccccccccccccccHHHHHTTcccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHTTcTTTTTTccccHHHHHHHHHHTTcTHHHHHHHHHHHHHHHHHHHHHHccccccTTTcccTTHHHHHHHTTTTTHHHHHHHTTTcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHccccccccTTTTTTcccccHHHHHHHcccccccccTTcccccccccTTccccTTcTTHHHHHHHHHHTTTGGGTTTTTcccTHHHHHHTTTTccccccccEccccEEEEEccEEcTTTccEEcccTTccccEEEHHccccccEEEccHHHHHHHHTTTcccccEEEEccccccccTTTcccccccccTTcccccccccccHHHHGGGGTTGGGccccccccccccccccccccHHHHHHHHTTccccccccccccccccccccccccccccccccccccccccccccccccccccccccccTcccccccccHHHHccHHHHHHHHHTccccTTcTHHHHHHHHTcEEEEcTTccHHHHHHHHccEETTTcccccccccccccccccccccccccccccccccccccTTTTTccHHHHTTHHHHTTcccEEEcccccccccEEEEccTTcccEEEEEEccEEEcTTccEEEccEEEEEEccccHHHHTTcTTccTTTcHHHHcHHHHHHHHHHHHHHHHccccccccTHHHHHHHHHTTTTccccccTTcEEEEcTTccccccccccccGGGccccEEEEEEccccTTTTTTTTccHHHHHcccccHHHHHHHHHTTcEEccccHHHHHHTTccccccTTcccc############################################################### DISOP:02AL 1417-1418| PSIPRED ccccHHccccccccEEEEEEEcccHHHHHHccEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEcccccccccHHHHHHHHHHHHcccHHHHHHHHHHcccccccccccHHHHHHHccHHHHHHHHcccccccccccccHHHHHHHHcccHHHHHHHHHHHHHHcccHHHHHHHccHHHHHHHHHHccccHHHEEEEEEcccccccccEEEEccccccccHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHccHHHHHHHHccccccccccEEEEccccEEEEEEcccHHHHHHHcccEEccHHHHcccccEEccccHHHHHHcccccEEHHHHHcccEEEEEcccccccccEEEEEEEEccccEEEEcHHHcccccccccccEEEEEccccHHHHHHHHHHHcccccEEccccccEEEEEEHHHHHHHHHHHcccccccccHHHHccHHHHHHHHHcccccHHHcEEEEcccccccccccccccccEEEccccccEEEEccccccccHHccccccccHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHccEEEEccEEccHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHccccccHHHHHHHHHHccccccccccccccccccHHHccccHHHHHHHHHHHHHHHHHHcccccccEEEEHHHHHHHccEEEEEccccccccEEEEEEEEccccHHHHHHHHcccHHccccccccccEEEEccccccHHHHHHHHHcccccccEEcccHHHHHHHHHHHHHHHHHHccccccHHHcccccccccccHHHHHHHHHHHHHHccccccccccccccccccEEEEEccEEEEcccccEEEEEcccEEEEEEccccEEEEEEEccccEEEEEcccEEEEccEEEEEccccccEEEEcccEEEEEEEEccccHHEHHHHHHHHHHcccHHHHHHHHHccccEEEEEEcccccEEEEEEcccccEEEEccccEEccccEEEEEEEcccccccccccHHHHHHHHHHccccccEEEEccccEEEEccccccccEEEEEEEccccEEEEEEEccccEEEEEcccEEEEccEEEcccccHHHHHHHHcHHHHHHHHHHHHHHHHHHccccccHHHHHHHHcccccEEEEEEccccccccccHHHHHHHHHHHHHHHHcccccccccEEEEcEEEcccccccHHHHccHHHHHHHHHHHHHcccccccccccccEEEcccccccccHHHHHHHHHHcccHHHHcccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHccc 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