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Francisella tularensis subsp. mediasiatica FSC147 (ftul2)
Gene : rpoD
DDBJ      :rpoD         RNA polymerase sigma 70 factor RpoD
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  909/915 : Eukaryota  22/199 : Viruses  0/175   --->[See Alignment]
a.177.1a.4.13
:577 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   339->577 3dxjF PDBj 2e-71 58.8 %
:RPS:PDB   81->115,268->577 3dxjF PDBj 1e-38 47.7 %
:RPS:SCOP  81->115 1iw7F3  a.177.1.1 * 2e-05 45.7 %
:RPS:SCOP  105->410 1sigA  a.177.1.1 * 2e-55 42.6 %
:RPS:SCOP  414->473 1iw7F1  a.4.13.1 * 2e-14 50.0 %
:RPS:SCOP  509->567 1ku3A  a.4.13.2 * 2e-13 60.3 %
:HMM:SCOP  103->410 1sigA_ a.177.1.1 * 4.6e-70 37.9 %
:HMM:SCOP  416->491 1rp3A1 a.4.13.1 * 1.5e-17 36.0 %
:HMM:SCOP  474->579 1iw7F2 a.4.13.2 * 3.8e-25 42.9 %
:RPS:PFM   86->116 PF00140 * Sigma70_r1_2 4e-04 54.8 %
:RPS:PFM   173->310 PF04546 * Sigma70_ner 3e-07 28.5 %
:RPS:PFM   343->415 PF04542 * Sigma70_r2 5e-07 37.7 %
:RPS:PFM   422->496 PF04539 * Sigma70_r3 2e-13 47.3 %
:RPS:PFM   517->565 PF04545 * Sigma70_r4 3e-08 64.4 %
:HMM:PFM   343->413 PF04542 * Sigma70_r2 1.6e-24 32.4 71/71  
:HMM:PFM   422->499 PF04539 * Sigma70_r3 1.2e-22 40.3 77/78  
:HMM:PFM   516->566 PF04545 * Sigma70_r4 1.2e-20 53.2 47/50  
:HMM:PFM   173->302 PF04546 * Sigma70_ner 9.7e-19 33.8 130/211  
:HMM:PFM   85->117 PF00140 * Sigma70_r1_2 4.4e-12 51.5 33/37  
:HMM:PFM   8->76 PF03979 * Sigma70_r1_1 6.8e-12 36.9 65/82  
:HMM:PFM   296->373 PF04012 * PspA_IM30 3.6e-06 21.1 76/221  
:BLT:SWISS 8->577 RPOD_SALTY e-133 51.0 %
:PROS 48->59|PS00136|SUBTILASE_ASP
:PROS 367->380|PS00715|SIGMA70_1
:PROS 538->564|PS00716|SIGMA70_2
:PROS 343->350|PS00867|CPSASE_2
:COIL

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID ACD30850.1 GT:GENE rpoD GT:PRODUCT RNA polymerase sigma 70 factor RpoD GT:DATABASE GIB00719CH01 GT:ORG ftul2 GB:ACCESSION GIB00719CH01 GB:LOCATION 995549..997282 GB:FROM 995549 GB:TO 997282 GB:DIRECTION + GB:GENE rpoD GB:PRODUCT RNA polymerase sigma 70 factor RpoD GB:PROTEIN_ID ACD30850.1 GB:DB_XREF GI:187712553 GB:GENE:GENE rpoD LENGTH 577 SQ:AASEQ MTKEDLLSDLKDLMIDGRERGYLTRADILDALPGDVSEDPKIYEEIEAILIDAGIDVYDRTPQIEEDDERKVSEDNLDDLKGKTSDPIRMYMREMGIVDLLDKKGETDIAVRIEEGTTEVFSTILSYPIVIKTYIERFRELEEKAIDYMNSQDIENEPVARYIRFNEVMAGFSDEQVTEEKVAEDDHEEKIDTQRAYEFFTNLEKMFEEYQDKPNKKLYTKIVKEFDNLRLSTSHLQKLVDYIRLPYARVKEFERKILRVCVERSKTPRQEFIKVYKVGSLEWLEPLTKKYKFTENTIREIKNLTKQINQFQILMMMDIEELKQVNLEISRSEAKITQAKKEMIEANLRLVVSEAKKYTNRGLHFLDIIQEGNIGLMKAVDKFDYRKGFKFSTYATWWIRQAITRSIADQARTIRVPVHMIETINKVNRIKRQILQEKGREATEEEIIEHTPNMTKEKLKKILNISHTPISMESPIGDDEDSTVGDFIEDKNNYSPIEAANLENLREAIKELIETGLTEREAKVLMMRFGIGMNTDHTLEEVGKQFNVTRERIRQIEAKALRKLKHPSRSAFLKTFL GT:EXON 1|1-577:0| BL:SWS:NREP 1 BL:SWS:REP 8->577|RPOD_SALTY|e-133|51.0|547/615| PROS 48->59|PS00136|SUBTILASE_ASP|PDOC00125| PROS 367->380|PS00715|SIGMA70_1|PDOC00592| PROS 538->564|PS00716|SIGMA70_2|PDOC00592| PROS 343->350|PS00867|CPSASE_2|PDOC00676| COIL:NAA 33 COIL:NSEG 1 COIL:REGION 315->347| BL:PDB:NREP 1 BL:PDB:REP 339->577|3dxjF|2e-71|58.8|238/349| RP:PDB:NREP 1 RP:PDB:REP 81->115,268->577|3dxjF|1e-38|47.7|343/349| RP:PFM:NREP 5 RP:PFM:REP 86->116|PF00140|4e-04|54.8|31/36|Sigma70_r1_2| RP:PFM:REP 173->310|PF04546|3e-07|28.5|137/209|Sigma70_ner| RP:PFM:REP 343->415|PF04542|5e-07|37.7|69/70|Sigma70_r2| RP:PFM:REP 422->496|PF04539|2e-13|47.3|74/78|Sigma70_r3| RP:PFM:REP 517->565|PF04545|3e-08|64.4|45/49|Sigma70_r4| HM:PFM:NREP 7 HM:PFM:REP 343->413|PF04542|1.6e-24|32.4|71/71|Sigma70_r2| HM:PFM:REP 422->499|PF04539|1.2e-22|40.3|77/78|Sigma70_r3| HM:PFM:REP 516->566|PF04545|1.2e-20|53.2|47/50|Sigma70_r4| HM:PFM:REP 173->302|PF04546|9.7e-19|33.8|130/211|Sigma70_ner| HM:PFM:REP 85->117|PF00140|4.4e-12|51.5|33/37|Sigma70_r1_2| HM:PFM:REP 8->76|PF03979|6.8e-12|36.9|65/82|Sigma70_r1_1| HM:PFM:REP 296->373|PF04012|3.6e-06|21.1|76/221|PspA_IM30| GO:PFM:NREP 25 GO:PFM GO:0003677|"GO:DNA binding"|PF00140|IPR009042| GO:PFM GO:0003700|"GO:transcription factor activity"|PF00140|IPR009042| GO:PFM GO:0006352|"GO:transcription initiation"|PF00140|IPR009042| GO:PFM GO:0006355|"GO:regulation of transcription, DNA-dependent"|PF00140|IPR009042| GO:PFM GO:0016987|"GO:sigma factor activity"|PF00140|IPR009042| GO:PFM GO:0003677|"GO:DNA binding"|PF04546|IPR007631| GO:PFM GO:0003700|"GO:transcription factor activity"|PF04546|IPR007631| GO:PFM GO:0006352|"GO:transcription initiation"|PF04546|IPR007631| GO:PFM GO:0006355|"GO:regulation of transcription, DNA-dependent"|PF04546|IPR007631| GO:PFM GO:0016987|"GO:sigma factor activity"|PF04546|IPR007631| GO:PFM GO:0003677|"GO:DNA binding"|PF04542|IPR007627| GO:PFM GO:0003700|"GO:transcription factor activity"|PF04542|IPR007627| GO:PFM GO:0006352|"GO:transcription initiation"|PF04542|IPR007627| GO:PFM GO:0006355|"GO:regulation of transcription, DNA-dependent"|PF04542|IPR007627| GO:PFM GO:0016987|"GO:sigma factor activity"|PF04542|IPR007627| GO:PFM GO:0003677|"GO:DNA binding"|PF04539|IPR007624| GO:PFM GO:0003700|"GO:transcription factor activity"|PF04539|IPR007624| GO:PFM GO:0006352|"GO:transcription initiation"|PF04539|IPR007624| GO:PFM GO:0006355|"GO:regulation of transcription, DNA-dependent"|PF04539|IPR007624| GO:PFM GO:0016987|"GO:sigma factor activity"|PF04539|IPR007624| GO:PFM GO:0003677|"GO:DNA binding"|PF04545|IPR007630| GO:PFM GO:0003700|"GO:transcription factor activity"|PF04545|IPR007630| GO:PFM GO:0006352|"GO:transcription initiation"|PF04545|IPR007630| GO:PFM GO:0006355|"GO:regulation of transcription, DNA-dependent"|PF04545|IPR007630| GO:PFM GO:0016987|"GO:sigma factor activity"|PF04545|IPR007630| RP:SCP:NREP 4 RP:SCP:REP 81->115|1iw7F3|2e-05|45.7|35/184|a.177.1.1| RP:SCP:REP 105->410|1sigA|2e-55|42.6|289/305|a.177.1.1| RP:SCP:REP 414->473|1iw7F1|2e-14|50.0|60/61|a.4.13.1| RP:SCP:REP 509->567|1ku3A|2e-13|60.3|58/61|a.4.13.2| HM:SCP:REP 103->410|1sigA_|4.6e-70|37.9|301/0|a.177.1.1|1/1|Sigma2 domain of RNA polymerase sigma factors| HM:SCP:REP 416->491|1rp3A1|1.5e-17|36.0|75/0|a.4.13.1|1/1|Sigma3 and sigma4 domains of RNA polymerase sigma factors| HM:SCP:REP 474->579|1iw7F2|3.8e-25|42.9|105/105|a.4.13.2|1/1|Sigma3 and sigma4 domains of RNA polymerase sigma factors| OP:NHOMO 2767 OP:NHOMOORG 931 OP:PATTERN -------------------------------------------------------------------- 1123522222222233322-23222322222223337465333421112322121111114462664CCB41111111211372254411111111111111112211142222222222111111-1111111115555611155P7967765677666878665789A757555557555532-1132233555555556455456564334555547633222222225622222222222222222221111211211111111111111111111111111111111111111111111111111111111111111154654444445455556333333545324654533445445545575112326222333333224222232223233333333333-3333433333323223333333332223333333333332222222222222343222222222222222222222222222222222232222266667645565664555554566656552244423222222432443422333222222232333433323233332333233444333455654723111111111111111111111111155443443444435444444444444444443211543422222243444444445444444-44444343444443443343334444434444444444444444424324432444444444444223233333333322434222222222222222222222222244333333353333333332222222223555544444545442222222222222222442222222222222243111111-11111111111111111112132111111231 -------1----------------------------------------------------------------------------------------------------4------------------------------------------------------------------4112K12223668B-64871---6 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 480 STR:RPRED 83.2 SQ:SECSTR ################################################################################cTTcccHHHHHGGGGcccccccHHHHHHHHHHHHHHHHHHHHHHTTcHHHHHHHHHHHTTTT#################TTcccGGGTEEEEcccccccTTTTccccTTTccHHHHHHHHHHHHHHHHHHHHTccHHHHHHHHHHHTTEEEcHHHHHHHHHHHHHHHHHHHHHHHHGGcccccccTTHHHHHHHHHHTTTccHHHHHHHHHTccTTcccccccccccTTTHHHHHHHHHHTccHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHGGGccccccHHHHHHHHHHHHHHHHHcccTTccccHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHTcTTccHHHHHHHHTcccccTTcccTTcccccGGGTccccccccHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHTTTTccTTcHHHHHHHTTcccHHHHHHHHHHHHHHHHHTTTcccGGGcc DISOP:02AL 577-578| PSIPRED ccHHHHHHHHHHHHHHHHHcccccHHHHHHHccccccccHHHHHHHHHHHHHcccEEcccccccccccHHHHHHccccccccccccHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHccccccHHccccccccccccccccccccccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHccHHccccHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHccccHHHHHHHHHHcccccccccccccccccccHHcccccccccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHcccccccccHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHc //