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Francisella tularensis subsp. mediasiatica FSC147 (ftul2)
Gene : rpsA
DDBJ      :rpsA         30S ribosomal protein S1
Swiss-Prot:             

Homologs  Archaea  29/68 : Bacteria  881/915 : Eukaryota  153/199 : Viruses  0/175   --->[See Alignment]
a.152.1b.40.4
:556 amino acids
:SECSTR
:PSIPRED
:BLT:PDB   188->261 1sroA PDBj 3e-11 45.2 %
:BLT:PDB   270->347 2k4kA PDBj 5e-10 41.8 %
:BLT:PDB   364->434 1sroA PDBj 2e-08 39.4 %
:BLT:PDB   450->522 2k4kA PDBj 2e-12 45.1 %
:RPS:PDB   31->525 3bzcA PDBj 6e-53 12.2 %
:RPS:SCOP  19->76 2nn6H1  b.40.4.5 * 2e-05 15.5 %
:RPS:SCOP  52->197 1gu9A  a.152.1.1 * 6e-21 15.4 %
:RPS:SCOP  172->284 1wi5A  b.40.4.5 * 8e-20 17.7 %
:RPS:SCOP  273->348 1sroA  b.40.4.5 * 6e-15 42.1 %
:RPS:SCOP  342->431 1jjgA  b.40.4.5 * 3e-16 15.9 %
:RPS:SCOP  450->525 2oceA4  b.40.4.5 * 1e-13 27.6 %
:HMM:SCOP  1->113 1wi5A_ b.40.4.5 * 2.8e-23 31.9 %
:HMM:SCOP  91->172 1q46A2 b.40.4.5 * 2.2e-15 20.7 %
:HMM:SCOP  189->273 1go3E1 b.40.4.5 * 1.3e-26 43.5 %
:HMM:SCOP  255->341 1wi5A_ b.40.4.5 * 2.5e-26 41.9 %
:HMM:SCOP  350->434 1q46A2 b.40.4.5 * 9.5e-24 40.0 %
:HMM:SCOP  428->527 1wi5A_ b.40.4.5 * 8.3e-26 33.7 %
:RPS:PFM   197->257 PF00575 * S1 2e-11 49.2 %
:RPS:PFM   274->344 PF00575 * S1 4e-07 38.0 %
:RPS:PFM   362->431 PF00575 * S1 5e-07 35.7 %
:RPS:PFM   450->519 PF00575 * S1 7e-08 37.1 %
:HMM:PFM   19->86 PF00575 * S1 5.5e-13 29.4 68/74  
:HMM:PFM   103->171 PF00575 * S1 1.3e-11 30.4 69/74  
:HMM:PFM   191->260 PF00575 * S1 3.5e-26 50.0 70/74  
:HMM:PFM   274->347 PF00575 * S1 3.1e-21 39.7 73/74  
:HMM:PFM   361->433 PF00575 * S1 2.2e-19 35.6 73/74  
:HMM:PFM   447->521 PF00575 * S1 3.6e-21 43.8 73/74  
:BLT:SWISS 3->554 RS1_NEIMB e-178 53.1 %
:REPEAT 4|139->227|230->316|317->400|401->488

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID ACD31456.1 GT:GENE rpsA GT:PRODUCT 30S ribosomal protein S1 GT:DATABASE GIB00719CH01 GT:ORG ftul2 GB:ACCESSION GIB00719CH01 GB:LOCATION 1775600..1777270 GB:FROM 1775600 GB:TO 1777270 GB:DIRECTION + GB:GENE rpsA GB:PRODUCT 30S ribosomal protein S1 GB:PROTEIN_ID ACD31456.1 GB:DB_XREF GI:187713159 GB:GENE:GENE rpsA LENGTH 556 SQ:AASEQ MSENFKELFEQSLKQTEMRIGKIIEATVVSIDKEFAMIDAGLKSESFIPVSSLKNSNGELEVAAGDRINVVLEALDNSCGETRLSRDKAKKIELWDRIEKAFENNETVLGKITNHVRGGYTMDVEGLRAFLPGSLVDTRPIKDVAHLEDKDIELKVVKIDTKRNNIVVSRKAVIEENNSGDRDAMLEKISESSVLKGIVKNITDFGAFIDLGGVDGLLHITDISWSRISHPTDVLSIGQEIDVKVIKFDKEKQRISLGIKQLGEDPWLNIANELPVGAKLMGTVTNITDYGCFVKLKEGIEGLVHTSEMDWTNKNVNPHKAVSIGQEVEVIVLELDADNHRISLGIKQCRPNPWSEFEKNYKPGDKVTGKIRSITEFGVFIGLEGGIDGLVHISDVAWDNPAKAIKELKKGDEVEAVLVSVNTDLERIALSMKQLSEDPFKNFINIHPKGSLVTGKVTKVQDNGAVVMLDEDNNIDGFIRISEISAEHTKDVRDELSEGQEVEARIINIDAKKRSITLSIKAVDEDNTAAGKSNYKVEKMTPTTLGDLIKEQLNKK GT:EXON 1|1-556:0| BL:SWS:NREP 1 BL:SWS:REP 3->554|RS1_NEIMB|e-178|53.1|550/561| NREPEAT 1 REPEAT 4|139->227|230->316|317->400|401->488| BL:PDB:NREP 4 BL:PDB:REP 188->261|1sroA|3e-11|45.2|73/76| BL:PDB:REP 270->347|2k4kA|5e-10|41.8|76/130| BL:PDB:REP 364->434|1sroA|2e-08|39.4|70/76| BL:PDB:REP 450->522|2k4kA|2e-12|45.1|71/130| RP:PDB:NREP 1 RP:PDB:REP 31->525|3bzcA|6e-53|12.2|474/730| RP:PFM:NREP 4 RP:PFM:REP 197->257|PF00575|2e-11|49.2|61/74|S1| RP:PFM:REP 274->344|PF00575|4e-07|38.0|70/74|S1| RP:PFM:REP 362->431|PF00575|5e-07|35.7|70/74|S1| RP:PFM:REP 450->519|PF00575|7e-08|37.1|68/74|S1| HM:PFM:NREP 6 HM:PFM:REP 19->86|PF00575|5.5e-13|29.4|68/74|S1| HM:PFM:REP 103->171|PF00575|1.3e-11|30.4|69/74|S1| HM:PFM:REP 191->260|PF00575|3.5e-26|50.0|70/74|S1| HM:PFM:REP 274->347|PF00575|3.1e-21|39.7|73/74|S1| HM:PFM:REP 361->433|PF00575|2.2e-19|35.6|73/74|S1| HM:PFM:REP 447->521|PF00575|3.6e-21|43.8|73/74|S1| GO:PFM:NREP 4 GO:PFM GO:0003723|"GO:RNA binding"|PF00575|IPR003029| GO:PFM GO:0003723|"GO:RNA binding"|PF00575|IPR003029| GO:PFM GO:0003723|"GO:RNA binding"|PF00575|IPR003029| GO:PFM GO:0003723|"GO:RNA binding"|PF00575|IPR003029| RP:SCP:NREP 6 RP:SCP:REP 19->76|2nn6H1|2e-05|15.5|58/82|b.40.4.5| RP:SCP:REP 52->197|1gu9A|6e-21|15.4|143/172|a.152.1.1| RP:SCP:REP 172->284|1wi5A|8e-20|17.7|113/119|b.40.4.5| RP:SCP:REP 273->348|1sroA|6e-15|42.1|74/76|b.40.4.5| RP:SCP:REP 342->431|1jjgA|3e-16|15.9|88/102|b.40.4.5| RP:SCP:REP 450->525|2oceA4|1e-13|27.6|74/94|b.40.4.5| HM:SCP:REP 1->113|1wi5A_|2.8e-23|31.9|113/0|b.40.4.5|1/6|Nucleic acid-binding proteins| HM:SCP:REP 91->172|1q46A2|2.2e-15|20.7|82/0|b.40.4.5|2/6|Nucleic acid-binding proteins| HM:SCP:REP 189->273|1go3E1|1.3e-26|43.5|85/0|b.40.4.5|3/6|Nucleic acid-binding proteins| HM:SCP:REP 255->341|1wi5A_|2.5e-26|41.9|86/0|b.40.4.5|4/6|Nucleic acid-binding proteins| HM:SCP:REP 350->434|1q46A2|9.5e-24|40.0|85/0|b.40.4.5|5/6|Nucleic acid-binding proteins| HM:SCP:REP 428->527|1wi5A_|8.3e-26|33.7|98/0|b.40.4.5|6/6|Nucleic acid-binding proteins| OP:NHOMO 1662 OP:NHOMOORG 1063 OP:PATTERN -----------------------11111--1-1211------1-1--11111111111111111---- 2221111111111111111-1111111111111111111111111111111111111111111111121211111111111112111122221211111111111223111111111111111121111111111144433---31222322222222222222211223222222222222211111111144333333334333333324444334433433244445412233333333333333343321111221111111112122121-22233232222222222222222233333333333332112221112132333333343343215542223333211211222112321122221121121111111111111111111111111111111111111111111111111111111111111222122222222111111111111112111111111111111111111111-1111122222222221111111111111122111111112111111111322222221211112211111111111111111212322222232221343133424222233212111111111111111111131122112222211233211111212111111121121-1222111111111122111111111111-111112111111111111111111111111211112112222111111111211111111111112121111111111113222221212211121122222222111222222111111111211111111111112221222222222222111112221111111222222211111111212-------------------------1211111-11111 ------------11111111111111111111111111111111112112111112211212112111111111111-1121111122-121111111111-1111-13-2-112-2-11111-2211-1311112---111142-111-2-11----1-----1--------112221H35314A6752551241-13 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 544 STR:RPRED 97.8 SQ:SECSTR #########cccEEEEEcccccEEEEEEEEcHHHHHHHHHTTccccccccHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTccccccccEEEEEccccccEEEEEEcTTccEEEEEEEcccGGGccHHHHHHHHHHHHHHHHHHHTccEEEEEccTTHHHHHHHHHHHHHHcGGGccEEEEEccHHHHHHHHcHHHHHHEcGGGccHHHHHcTTccHHHHHHHHHHHHHHcHHHHHTTccGGGGTccTTGGGccHHHHHHHHHHHHHHHHHHHcEETTTccHHHHHTcTTccHccHHHHHHHHHHHHHHcccccGGGGGGcTTccHHHHHHHGGGEEcTTcccGGGGccccGGGHHHHHHHHHHHTccHHHHTTcHHHHHHccGGGTccccccHHHHHHHHHHHcTTccccccccTTTTcccccccTTccTTcccccEEEEEETTEEEEEcccEcccEEEEETTTccccccccHHHHccTTccccccEEEEETTTTEEEEcccccccHHHHHHTcccTTccHHHHHTTccccHHH### PSIPRED ccHHHHHHHHHHHHHcccccccEEEEEEEEEEccEEEEEEcccccEEEEHHHccccccccccccccEEEEEEEEEEccccEEEEEEccccHHHHHHHHHHHHHcccEEEEEEEEccccEEEEEEccccEEEEHHHcccccccccccccccEEEEEEEEEccccccEEEEccHHHHHHHHHHHHHHHcccccccEEEEEEEEEEccEEEEEEccEEEEEEHHHccccccccHHHHcccccEEEEEEEEEEccccEEEEEEEEcccccHHHHHHHccccEEEEEEEEEEEccEEEEEccccEEEEEEEEEEccccEEccHHHEEEcccEEEEEEEEEcccccEEEEEHHHHccccHHHHHcccccccEEEEEEEEEEEcEEEEEEcccEEEEEEHHHccccccccHHHEEccccEEEEEEEEEcccccEEEEEEEccccccccccccccccccEEEEEEEEEccccEEEEEcccccEEEEEEHHHccccccccHHHEEccccEEEEEEEEEEccccEEEEEEEEcccccHHHHHHHccccccccccHHHHHHHHHHcc //