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Francisella tularensis subsp. mediasiatica FSC147 (ftul2)
Gene : rpsD
DDBJ      :rpsD         30S ribosomal protein S4
Swiss-Prot:RS4_FRATM    RecName: Full=30S ribosomal protein S4;

Homologs  Archaea  0/68 : Bacteria  911/915 : Eukaryota  6/199 : Viruses  0/175   --->[See Alignment]
d.66.1
:206 amino acids
:SECSTR
:PSIPRED
:BLT:PDB   2->206 1vs5D PDBj 3e-81 69.8 %
:RPS:PDB   1->206 3bbnD PDBj 8e-46 37.2 %
:RPS:SCOP  2->206 1fjgD  d.66.1.2 * 3e-48 47.3 %
:HMM:SCOP  2->206 1fjgD_ d.66.1.2 * 7.7e-67 45.4 %
:RPS:PFM   3->95 PF00163 * Ribosomal_S4 2e-08 44.9 %
:RPS:PFM   97->142 PF01479 * S4 2e-09 50.0 %
:HMM:PFM   2->95 PF00163 * Ribosomal_S4 1.3e-27 47.3 91/94  
:HMM:PFM   97->143 PF01479 * S4 7.3e-19 51.1 47/48  
:BLT:SWISS 1->206 RS4_FRATM e-116 100.0 %
:PROS 94->118|PS00632|RIBOSOMAL_S4

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID ACD31325.1 GT:GENE rpsD GT:PRODUCT 30S ribosomal protein S4 GT:DATABASE GIB00719CH01 GT:ORG ftul2 GB:ACCESSION GIB00719CH01 GB:LOCATION complement(1626657..1627277) GB:FROM 1626657 GB:TO 1627277 GB:DIRECTION - GB:GENE rpsD GB:PRODUCT 30S ribosomal protein S4 GB:PROTEIN_ID ACD31325.1 GB:DB_XREF GI:187713028 GB:GENE:GENE rpsD LENGTH 206 SQ:AASEQ MARYLGPKCKLSRREGTDLFLKSGVKANDEKCKMNTAPGQHGARRARLSDYGLQLRERQKVRRMYGILEGQFKKYYVEASRRKGNTGATLLELLESRLDNVVYRMGFAATRAEARQLVVHKGIMVNGHTCNVPSAQVKAGDVVAVREKAKKQLRIQNAVELAKHRKELSWIDVNTDSLEGTMKSSPDRSELSADINEQLIIELYSK GT:EXON 1|1-206:0| SW:ID RS4_FRATM SW:DE RecName: Full=30S ribosomal protein S4; SW:GN Name=rpsD; OrderedLocusNames=FTM_1503; SW:KW Complete proteome; Ribonucleoprotein; Ribosomal protein; RNA-binding;rRNA-binding. SW:EXACT T SW:FUNC + BL:SWS:NREP 1 BL:SWS:REP 1->206|RS4_FRATM|e-116|100.0|206/206| GO:SWS:NREP 4 GO:SWS GO:0030529|"GO:ribonucleoprotein complex"|Ribonucleoprotein| GO:SWS GO:0005840|"GO:ribosome"|Ribosomal protein| GO:SWS GO:0003723|"GO:RNA binding"|RNA-binding| GO:SWS GO:0019843|"GO:rRNA binding"|rRNA-binding| PROS 94->118|PS00632|RIBOSOMAL_S4|PDOC00549| BL:PDB:NREP 1 BL:PDB:REP 2->206|1vs5D|3e-81|69.8|205/205| RP:PDB:NREP 1 RP:PDB:REP 1->206|3bbnD|8e-46|37.2|199/199| RP:PFM:NREP 2 RP:PFM:REP 3->95|PF00163|2e-08|44.9|89/93|Ribosomal_S4| RP:PFM:REP 97->142|PF01479|2e-09|50.0|46/46|S4| HM:PFM:NREP 2 HM:PFM:REP 2->95|PF00163|1.3e-27|47.3|91/94|Ribosomal_S4| HM:PFM:REP 97->143|PF01479|7.3e-19|51.1|47/48|S4| GO:PFM:NREP 3 GO:PFM GO:0005622|"GO:intracellular"|PF00163|IPR001912| GO:PFM GO:0019843|"GO:rRNA binding"|PF00163|IPR001912| GO:PFM GO:0003723|"GO:RNA binding"|PF01479|IPR002942| RP:SCP:NREP 1 RP:SCP:REP 2->206|1fjgD|3e-48|47.3|205/208|d.66.1.2| HM:SCP:REP 2->206|1fjgD_|7.7e-67|45.4|205/208|d.66.1.2|1/1|Alpha-L RNA-binding motif| OP:NHOMO 954 OP:NHOMOORG 917 OP:PATTERN -------------------------------------------------------------------- 1111111111111111111-11111111111111111111111211111111111111112211111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111113231222222212111222222111112111111111111111111111211111111111111111111111111111111111-1111111111111111111121111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111122211111111121112121111111111111111111111111112211111111111111111111111111111111111111121111111111111111111111111111111111111111111111111-11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111112111111111111111111-11111111111111111111111111111111 --------------------------------------------------------------------------------------------------------------------------------------------------------------1--------------1-1----------1-1--2------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 206 STR:RPRED 100.0 SQ:SECSTR ccccccccTTcccccccccccccccccccccccccccccccccccccccTTHHHHTTHHHHHHHHTccHHHHHHHHHHHHHccccTTTTTTHHHHccTTTTTTTTTcccccHHHHHHHHTTcEEETTEEcccTTccccTTEEEEEcccTTccHHHHHHcccTTTccccTTEEEETTTTEEEEcccccGGGccccccHHHHTTTccc PSIPRED cccccccEEEEEHHcccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHcccEEEccEEEEcccEEEccccEEEEcccHHHHHHHHHHHHHccccccccEEEEEccccEEEEEEcccHHHccccccccEEEEEEcc //