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Francisella tularensis subsp. mediasiatica FSC147 (ftul2)
Gene : secD
DDBJ      :secD         preprotein translocase, subunit D, membrane protein
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  784/915 : Eukaryota  1/199 : Viruses  0/175   --->[See Alignment]
b.69.4f.35.1
:645 amino acids
:SECSTR
:PSIPRED
:RPS:PDB   222->455,526->569 2dhhA PDBj 3e-06 22.7 %
:RPS:PDB   542->622 2dx7A PDBj 5e-04 14.1 %
:RPS:SCOP  158->345 1pguA2  b.69.4.1 * 2e-04 18.3 %
:RPS:SCOP  449->632 1iwgA7  f.35.1.1 * 1e-20 16.7 %
:HMM:SCOP  358->637 1iwgA8 f.35.1.1 * 2e-40 27.9 %
:RPS:PFM   453->627 PF02355 * SecD_SecF 1e-35 44.8 %
:HMM:PFM   461->629 PF02355 * SecD_SecF 1.3e-27 26.2 168/189  
:HMM:PFM   120->148 PF07549 * Sec_GG 1.6e-09 61.5 26/29  
:HMM:PFM   203->245 PF11858 * DUF3378 0.00062 23.3 43/82  
:BLT:SWISS 9->643 SECD_SHIFL e-117 41.3 %
:TM
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID ACD31138.1 GT:GENE secD GT:PRODUCT preprotein translocase, subunit D, membrane protein GT:DATABASE GIB00719CH01 GT:ORG ftul2 GB:ACCESSION GIB00719CH01 GB:LOCATION complement(1371410..1373347) GB:FROM 1371410 GB:TO 1373347 GB:DIRECTION - GB:GENE secD GB:PRODUCT preprotein translocase, subunit D, membrane protein GB:PROTEIN_ID ACD31138.1 GB:DB_XREF GI:187712841 GB:GENE:GENE secD LENGTH 645 SQ:AASEQ MSNNRSLPINQFPLWKNLLIVIILALAIFYALPNVFGKSPALQISQKDGDVTTQLLVSVENTLAKDKISYQKADIADDKSNIAITFKDVEEQLKAKKVLKDSLSDDYIIAMNMLSNSPNWLSALGANPMNLGLDLRGGMYLMLEADTKTSIDAQLDNSLSIILSAAKDNSINISSSTKAEEKSTIKAPQNYFDNGFVSITLANSVDVDKLKQYLSTDFIKTQDPNIIYTNKGNTVFISYNSAKILQLKQDAISQVVTVMRNRINALGVAEASVAQAGDNRVVIEIPGLQDATQAKQILGGTSTASFYLVNPVADRLAAEEQGYKVYSLDNGRGYQSYYSLKGTAVAGGADIIGASPSIDRQTGTPIVMVELDRSAASHFRQITGKNIGNPMGVMLVNTTYEKVKDKDGKEKNVVSKTEKLINVATIQSALGSQFQITGLNQKEANNLALMIKSGALQVPVHIVQEQQIGPSLGKDNIGKGMLSIVIALIAVVVFILVYYRVFGIIANIALVMNLILIVAVMSIIPGATLTLPGIAGIVLNLGMSIDGNVLIFERIREEIRAGMPRQSAIHIGYEKAFTTIVDSNITTLIVAVILFFIGSGAVKGFAITLMIGIVTSMFTSVTVSRAMTNFVYGKRKKLEKISIGI GT:EXON 1|1-645:0| BL:SWS:NREP 1 BL:SWS:REP 9->643|SECD_SHIFL|e-117|41.3|610/615| TM:NTM 5 TM:REGION 11->33| TM:REGION 477->499| TM:REGION 504->526| TM:REGION 533->554| TM:REGION 591->613| SEG 18->28|lliviilalai| SEG 484->497|ivialiavvvfilv| RP:PDB:NREP 2 RP:PDB:REP 222->455,526->569|2dhhA|3e-06|22.7|271/1022| RP:PDB:REP 542->622|2dx7A|5e-04|14.1|78/228| RP:PFM:NREP 1 RP:PFM:REP 453->627|PF02355|1e-35|44.8|174/185|SecD_SecF| HM:PFM:NREP 3 HM:PFM:REP 461->629|PF02355|1.3e-27|26.2|168/189|SecD_SecF| HM:PFM:REP 120->148|PF07549|1.6e-09|61.5|26/29|Sec_GG| HM:PFM:REP 203->245|PF11858|0.00062|23.3|43/82|DUF3378| GO:PFM:NREP 3 GO:PFM GO:0008565|"GO:protein transporter activity"|PF02355|IPR003335| GO:PFM GO:0015627|"GO:type II protein secretion system complex"|PF02355|IPR003335| GO:PFM GO:0015628|"GO:protein secretion by the type II secretion system"|PF02355|IPR003335| RP:SCP:NREP 2 RP:SCP:REP 158->345|1pguA2|2e-04|18.3|180/281|b.69.4.1| RP:SCP:REP 449->632|1iwgA7|1e-20|16.7|180/199|f.35.1.1| HM:SCP:REP 358->637|1iwgA8|2e-40|27.9|215/223|f.35.1.1|1/1|Multidrug efflux transporter AcrB transmembrane domain| OP:NHOMO 961 OP:NHOMOORG 785 OP:PATTERN -------------------------------------------------------------------- 1121111111-1-1111-1-11--1-1111111---11111111211111111111111111112--1221--------111111222111111111--111111111111111111111111111-1111111111111111111211111112111111111211111211111111111111111112211111111111111111111111111111112-11111112111111111111111-1111----------------------------------------------------------------------22-2122222221211-111212121--1111111111121112212122111111111111112111111111122222222222-11111111111121122222222211122111111122111111111-1-111221111111111221211111111111111111111111111111111111111111111111111111111111111111111111111111222222222111111111112112211121211111121111111211111122222111111111111111222212111122123323132333213222221-11111------11112111111111111-1111111111111111111111212111111111111111111211111112-222222222222111122222111121121111111111-11111111111111111111112121111112222222222221122222222223321111111111111111111111111111111111----------11--111----11---1221111111111 --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1---------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 321 STR:RPRED 49.8 SQ:SECSTR #############################################################################################################################################################################################################################ccccc##cccEEEEccccccHHHHHTTcTTcccccccccEEEETTccETccHHHHHHHHHHHHGGGccHHHHHHcccEEEccccccEEE####EEEEccccccHHHHHHHHHHTTHHHHHccccccEEEEcccccccEEEE#cHHHHHTTTccHHHHHHHHTTTcccccccccccccccccccHHHHHccEEEccTTTHHHHEEEEccccccccEEEETTEEcccEEEEccccc######################################################################ccccTTHHHHHHHHHHHHHHHHHHHHHHHHTTTTTccccTTTHHTcccHHHHHTTcccccHHHHHHHHHHHHHHTc###cEEEcccTGGGGGHHHHH####################### PSIPRED cccHHHHHHHHcHHHHHHHHHHHHHHHHHHHccccccccccEEEEcccccccHHHHHHHHHHHHHcccccccEEEEEEccEEEEEEccHHHHHHHHHHHHHHcccccEEEEccccccHHHHHHcccccccccEEccccEEEEEEccHHHHHHHHHHHHHHHHHHHHHHcccccccEEEcccccEEEEccccccccEEEEEEccHHHHHHHHHHHHHccccccccEEEEEccccEEEEEEcHHHHHHccHHHHHHHHHHHHHHHHHccccccEEEEEcccEEEEEEcccccHHHHHHHHcccEEEEEEEEcccccccccccccccccccccccccccEEEEcccccccHHHEEEEEEEEEcccccEEEEEEEcHHHHHHHHHHHHHHccccccEEEEEEcccccccHHHHHHHHHcccccEEEEcEEccccccEEEEccccHHHHHHHHHHHHHccccccEEEEEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHccEEEEEHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccEEEEccc //