Halobacterium sp. NRC-1 (halo0)
Gene : fumC
DDBJ :fumC fumarate hydratase
Swiss-Prot:FUMC_HALSA RecName: Full=Fumarate hydratase class II; Short=Fumarase C; EC=4.2.1.2;
Homologs Archaea 37/68 : Bacteria 772/915 : Eukaryota 179/199 : Viruses 0/175 --->[See Alignment]
a.127.1
:470 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB 6->424 1vdkA PDBj e-108 51.1 %
:RPS:PDB 5->461 3e04A PDBj e-110 42.8 %
:RPS:SCOP 6->459 1fuoA a.127.1.1 * e-121 48.2 %
:HMM:SCOP 5->462 1j3uA_ a.127.1.1 * 5.5e-165 44.6 %
:RPS:PFM 19->341 PF00206 * Lyase_1 8e-54 45.8 %
:RPS:PFM 408->461 PF10415 * FumaraseC_C 4e-06 42.6 %
:HMM:PFM 13->342 PF00206 * Lyase_1 6.3e-108 52.6 310/312
:HMM:PFM 408->461 PF10415 * FumaraseC_C 1.3e-25 59.3 54/55
:BLT:SWISS 1->470 FUMC_HALSA 0.0 100.0 %
:PROS 317->326|PS00163|FUMARATE_LYASES
:SEG
SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAG19688.1
GT:GENE fumC
GT:PRODUCT fumarate hydratase
GT:DATABASE GIB00041CH01
GT:ORG halo0
GB:ACCESSION GIB00041CH01
GB:LOCATION complement(1011395..1012807)
GB:FROM 1011395
GB:TO 1012807
GB:DIRECTION -
GB:GENE fumC
GB:PRODUCT fumarate hydratase
GB:NOTE FumC
GB:PROTEIN_ID AAG19688.1
GB:DB_XREF GI:10580868
GB:GENE:GENE fumC
LENGTH 470
SQ:AASEQ MSEDYRTEQDSLGEMQVPADAYWGAQTQRAIENFPISGIAFGRRFVRALGVVKKAAAQANRDLGLVDDERADAIVAAADEVIAGEHDDQFPVDVFQTGSGTSSNMNANEVIANRAAELLGEEIGDRVVHPNDHVNYGQSSNDVIPTAMHVASLDALVNDVKPGLETLAAELDDKADAFDGVVKTGRTHLQDATPVRLGQEFGGYRTQVEKGIDRIEAVAPRLSELALGGTAVGTGLNTHPEFPETAAGYISEETGVTFREADNHFEAQAAHDAMNEAHGALRTVAGSLNKIANDLRLLASGPRNGLGEIEQPENQPGSSIMPGKINPVVAEAVNQVHKQVVGNDAAIAAGAAEGQIDLNLYKPVLAHNFLQSADMLANASAAFGEKFVAKLEANEAACEAQVERSMALATALNPTIGYDKASEVAKAALKEGKTVTEVVVEKGYLSEAEAADVLDPEGMTHRGILSGDDT
GT:EXON 1|1-470:0|
SW:ID FUMC_HALSA
SW:DE RecName: Full=Fumarate hydratase class II; Short=Fumarase C; EC=4.2.1.2;
SW:GN Name=fumC; OrderedLocusNames=VNG_1356G;
SW:KW Complete proteome; Cytoplasm; Lyase; Tricarboxylic acid cycle.
SW:EXACT T
SW:FUNC +
BL:SWS:NREP 1
BL:SWS:REP 1->470|FUMC_HALSA|0.0|100.0|470/470|
GO:SWS:NREP 3
GO:SWS GO:0005737|"GO:cytoplasm"|Cytoplasm|
GO:SWS GO:0016829|"GO:lyase activity"|Lyase|
GO:SWS GO:0006099|"GO:tricarboxylic acid cycle"|Tricarboxylic acid cycle|
PROS 317->326|PS00163|FUMARATE_LYASES|PDOC00147|
SEG 66->83|vdderadaivaaadevia|
SEG 225->236|lalggtavgtgl|
SEG 345->352|aaiaagaa|
SEG 430->443|kegktvtevvvekg|
BL:PDB:NREP 1
BL:PDB:REP 6->424|1vdkA|e-108|51.1|419/458|
RP:PDB:NREP 1
RP:PDB:REP 5->461|3e04A|e-110|42.8|451/456|
RP:PFM:NREP 2
RP:PFM:REP 19->341|PF00206|8e-54|45.8|295/302|Lyase_1|
RP:PFM:REP 408->461|PF10415|4e-06|42.6|54/55|FumaraseC_C|
HM:PFM:NREP 2
HM:PFM:REP 13->342|PF00206|6.3e-108|52.6|310/312|Lyase_1|
HM:PFM:REP 408->461|PF10415|1.3e-25|59.3|54/55|FumaraseC_C|
GO:PFM:NREP 3
GO:PFM GO:0003824|"GO:catalytic activity"|PF00206|IPR000362|
GO:PFM GO:0006099|"GO:tricarboxylic acid cycle"|PF10415|IPR018951|
GO:PFM GO:0016829|"GO:lyase activity"|PF10415|IPR018951|
RP:SCP:NREP 1
RP:SCP:REP 6->459|1fuoA|e-121|48.2|454/456|a.127.1.1|
HM:SCP:REP 5->462|1j3uA_|5.5e-165|44.6|457/462|a.127.1.1|1/1|L-aspartase-like|
OP:NHOMO 1514
OP:NHOMOORG 988
OP:PATTERN 11----1211111111-111----11111111--------1-1---11--11--1-1---1111--11 1111132222322211111-11111211111111111246111112212222323111--11121132111-11111111111-1---1111-211--1322111111111-1-11-11111111---111---1111111---11111111111111111111111111111111111111111111----22444444342344444223332443-12311111111121111111111111111111111113223-1112211221212111--11-----1--111111111111---11111---11111111-1-1--23------------22-----1-222---2222-1-22111111---221111211112123111112111122222222221-3323322221112221232214112111111311121121111111111111112111111111111111111111111111-11-111-111112222221111111121111112211212-2111-11122112222111-11212222222111122212-2123-333321111111122221212-42142122222221222222211--111222111111112222212----11---1222-21111------22222222222222222-2222422222222222222222332222222222222222222222222222222222222222211211111111111121322222222222222222222-2122213333444323333233211111111111113222222221111111111111111----332211--------1---------------------------11-112112211- ----211-----1122221111112121111111111111111111111112222211111111211112113121111112122111-12121111111111221-1112121-111112--111111171-11111111111-1111111111111221-12112512712331-12S222113--31311131113 -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
STR:NPRED 464
STR:RPRED 98.7
SQ:SECSTR ccccEEEEEETTEEEEEETTccccHHHHHHHHHcccccGcccHHHHHHHHHHHHHHHHHGGGGTccHHHHHHHHHHHHHHHTHTccGGGccccccccTTcHHHHHHHHHHHHHHHHHHTTccTTccccccccccTTTccHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTTTcEEEEEETTEEEEEEEHHHHHHHHHHHHHHHHHHHHHTcTTTcEEcTTcTTTcccTTccTTHHHHHHHHHHHHHTcccEEcccHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHTcccccccccEEcEEccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHTccTTccccHHHHHHHHHHHHHHHHHHHHHHHHHTGGGcEEcHHHHHHHHHHccGGGGGGHHHHcHHHHHHHHHHHHHHTccHHHHHHHHTcccHHHHHHHccGGGccccHc######
DISOP:02AL 1-3, 465-470|
PSIPRED ccccccccccccccEEccHHHHccHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHcccHHHcHHHHHHHHHHHHHHHHHHHcccccHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHccccccccccHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccEEEEEcccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccEEcHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHcccccHHHHHHHHcHHHHccccccccccc
//
[GTOP]
