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Halobacterium sp. NRC-1 (halo0)
Gene : gyrA
DDBJ      :gyrA         DNA gyrase subunit A
Swiss-Prot:             

Homologs  Archaea  22/68 : Bacteria  910/915 : Eukaryota  185/199 : Viruses  9/175   --->[See Alignment]
b.68.10e.11.1
:824 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   39->493 3ilwB PDBj e-123 51.0 %
:BLT:PDB   507->812 1zi0B PDBj 3e-56 40.3 %
:RPS:PDB   39->490 1ab4A PDBj e-149 52.0 %
:RPS:PDB   499->610 3dwpB PDBj 3e-31 14.3 %
:RPS:PDB   715->814 1ddtA PDBj 1e-07 13.6 %
:RPS:SCOP  39->490 1ab4A  e.11.1.1 * e-150 52.0 %
:RPS:SCOP  505->821 1wp5A  b.68.10.1 * 2e-86 26.3 %
:HMM:SCOP  8->496 1bjtA_ e.11.1.1 * 1.9e-173 56.8 %
:HMM:SCOP  504->825 1wp5A_ b.68.10.1 * 1.9e-94 46.3 %
:RPS:PFM   40->477 PF00521 * DNA_topoisoIV e-139 61.1 %
:RPS:PFM   507->556 PF03989 * DNA_gyraseA_C 5e-04 38.8 %
:HMM:PFM   40->477 PF00521 * DNA_topoisoIV 1.6e-154 48.7 423/426  
:HMM:PFM   508->556 PF03989 * DNA_gyraseA_C 6.7e-11 26.5 49/50  
:HMM:PFM   558->609 PF03989 * DNA_gyraseA_C 6.5e-16 26.5 49/50  
:HMM:PFM   618->664 PF03989 * DNA_gyraseA_C 5.9e-09 27.7 47/50  
:HMM:PFM   666->712 PF03989 * DNA_gyraseA_C 1.9e-15 42.6 47/50  
:HMM:PFM   718->765 PF03989 * DNA_gyraseA_C 6.5e-11 29.8 47/50  
:HMM:PFM   768->814 PF03989 * DNA_gyraseA_C 4.7e-10 23.4 47/50  
:BLT:SWISS 15->808 GYRA_CLOAB 0.0 50.4 %
:COIL
:REPEAT 3|565->613|672->716|775->818
:REPEAT 2|617->637|717->737
:REPEAT 2|537->563|644->671
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAG19329.1 GT:GENE gyrA GT:PRODUCT DNA gyrase subunit A GT:DATABASE GIB00041CH01 GT:ORG halo0 GB:ACCESSION GIB00041CH01 GB:LOCATION 674013..676487 GB:FROM 674013 GB:TO 676487 GB:DIRECTION + GB:GENE gyrA GB:PRODUCT DNA gyrase subunit A GB:NOTE GyrA GB:PROTEIN_ID AAG19329.1 GB:DB_XREF GI:10580453 GB:GENE:GENE gyrA LENGTH 824 SQ:AASEQ MSSESPDVPDDVADRVKNVRVDEEMEQSYIDYAMSVIAGRALPDVRDGLKPVHRRILYAMHESGVTSGSGHRKSSNIVGDTMGDYHPHGDSPIYDALVRMAQDFSMRYPLVDGQGNFGSVDGDPAAAMRYTEARMAPIAEELLTDIEKDTVAFQANYDDRLTEPAVLPSSFPNLLVNGSSGIAVGMSTNVPPHNLGEVIDATIHLIDTPDCTVLDLMEYVKGPDFPTAANIVGRADVKQAYQTGRGRVRMRAEYHVESNGRRDSIVITELPYQQNKSTLVERIADDVRDGKLEGITDLRDESDRNGVRIVIDLKQKANTDVVENRLLESHLEKTFSVINLALVDGEPKVLTLKELLAEYVSHRKEVVRRRSEHDLGEAEDRAHILDGRLTALENADEVVELIQDAEDRDAAKETLKSAFDFSQDQADHIVRMQLGSLTSMEAADIESEYEDVTARIERLEEILGSEQELLDVIKDELREIKTQYADERRTSFIEDTGTVADEDLIPEEDTVVVLSEGDYIKRVPAETFDAQHRGGKGIIGSDLKDGDRVSTVFTASTHDYLLCFTDQGQVYRLKVYQVPEMSRTARGTSAVNILDLDDGEEISAVVTADDLDFKADDEYLTMATRNGYVKRTSVGEFGNILSTGIIAIDLEDGDALADVEVTDGSHDVILGSEAGMAIRFDEGDVRAMGRNARGVRGMDLDAADRIAGVAAVESEDDRSLLTVTEFGYGKRTRVGEYRSQSRNGKGLVDIKTGDRNGDVVSVDAVGDDDSLVVMSADGQIIQMPVDEISTVGRNTKGVNIMAVGSGDEVAGVSVRAADQADGEE GT:EXON 1|1-824:0| BL:SWS:NREP 1 BL:SWS:REP 15->808|GYRA_CLOAB|0.0|50.4|787/830| COIL:NAA 37 COIL:NSEG 1 COIL:REGION 441->477| NREPEAT 3 REPEAT 3|565->613|672->716|775->818| REPEAT 2|617->637|717->737| REPEAT 2|537->563|644->671| SEG 757->773|gdvvsvdavgdddslvv| BL:PDB:NREP 2 BL:PDB:REP 39->493|3ilwB|e-123|51.0|455/463| BL:PDB:REP 507->812|1zi0B|3e-56|40.3|290/296| RP:PDB:NREP 3 RP:PDB:REP 39->490|1ab4A|e-149|52.0|442/477| RP:PDB:REP 499->610|3dwpB|3e-31|14.3|112/117| RP:PDB:REP 715->814|1ddtA|1e-07|13.6|100/523| RP:PFM:NREP 2 RP:PFM:REP 40->477|PF00521|e-139|61.1|432/434|DNA_topoisoIV| RP:PFM:REP 507->556|PF03989|5e-04|38.8|49/50|DNA_gyraseA_C| HM:PFM:NREP 7 HM:PFM:REP 40->477|PF00521|1.6e-154|48.7|423/426|DNA_topoisoIV| HM:PFM:REP 508->556|PF03989|6.7e-11|26.5|49/50|DNA_gyraseA_C| HM:PFM:REP 558->609|PF03989|6.5e-16|26.5|49/50|DNA_gyraseA_C| HM:PFM:REP 618->664|PF03989|5.9e-09|27.7|47/50|DNA_gyraseA_C| HM:PFM:REP 666->712|PF03989|1.9e-15|42.6|47/50|DNA_gyraseA_C| HM:PFM:REP 718->765|PF03989|6.5e-11|29.8|47/50|DNA_gyraseA_C| HM:PFM:REP 768->814|PF03989|4.7e-10|23.4|47/50|DNA_gyraseA_C| GO:PFM:NREP 10 GO:PFM GO:0003677|"GO:DNA binding"|PF00521|IPR002205| GO:PFM GO:0003918|"GO:DNA topoisomerase (ATP-hydrolyzing) activity"|PF00521|IPR002205| GO:PFM GO:0005524|"GO:ATP binding"|PF00521|IPR002205| GO:PFM GO:0005694|"GO:chromosome"|PF00521|IPR002205| GO:PFM GO:0006265|"GO:DNA topological change"|PF00521|IPR002205| GO:PFM GO:0003677|"GO:DNA binding"|PF03989|IPR006691| GO:PFM GO:0003916|"GO:DNA topoisomerase activity"|PF03989|IPR006691| GO:PFM GO:0005524|"GO:ATP binding"|PF03989|IPR006691| GO:PFM GO:0005694|"GO:chromosome"|PF03989|IPR006691| GO:PFM GO:0006265|"GO:DNA topological change"|PF03989|IPR006691| RP:SCP:NREP 2 RP:SCP:REP 39->490|1ab4A|e-150|52.0|442/477|e.11.1.1| RP:SCP:REP 505->821|1wp5A|2e-86|26.3|308/323|b.68.10.1| HM:SCP:REP 8->496|1bjtA_|1.9e-173|56.8|463/760|e.11.1.1|1/1|Type II DNA topoisomerase| HM:SCP:REP 504->825|1wp5A_|1.9e-94|46.3|313/0|b.68.10.1|1/1|GyrA/ParC C-terminal domain-like| OP:NHOMO 1978 OP:NHOMOORG 1126 OP:PATTERN -----------------------111111111-----------1111111111--------111---- 1111211111111111112-12111211111122221111211122222222222222222222221222222222221111111111222212222112222222222222222222222222211111111111111111111122222222222222222222222222222222222221111111112222222222222222222222222222212222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222212122222222222221222222222111221122111121111111111112222222222222222222222222222222222-22223222222222222222222222222222222222222222222222222221111111111112222222222222111112222222222222222222222222222222232222222222222222222222221121222222222111222112121111111111111111111111122111111111111111111111111111222223222222222222222222222222221-2222211111122222222222222222-22222222222222222222222222222222222222222222222222221222222222222112222222222222222222222222112222222122222222222222222222222222222222222222222222222322222222222222222212222222222222221211112-22222222222222222231111111111122 221122115221112111111111111111111111111121111111111111111111111-1111-1111-1111111-111111-121111111-112111111222121114112122122-319I2-4262--12-223121-21113-422113912121111-44113222F2233232131233443222 ---1---------------1---------------111-1----------------------------------------------------------------------------------------------------------------------------------111-- STR:NPRED 806 STR:RPRED 97.8 SQ:SECSTR ########HHHHHHHHHHHHHHHcccTHHHHHHHHHHHTTTcccTTTcccHHHHHHHHHHHHTTcccccccEEHHHHHHHHHHHTccccHHHHHHHHHHTTcTTTcccccEEEEcccccTTccccccTTTcEEEEcTTHHHHcTTTTTTcccEEEcTTcccEEEccccccccHHHHHcEEEccccccEEEccccHHHHHHHHHHHHHcTTccHHHHTTTccccccccccEEcccHHHHHHHHHcEEEEEEEcEEEEEcccETcEEEEEEccTTccHHHHHHHHHHHHTTTcccccccEEEccccccccEEEcccHHHHHHHHHHHHHHcTTEEEEEEEcEEEETTEEEEccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHcccHHHHHHHHHHEEEccHHHHHHHHTccGGGGcHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHccGGGcccEEEEccGGGHHHEccTGGGEHHHHTTTcTTcEEEEEcccccGGGGGGcHHHHHHHcEEEEEETTTTGGGTccHHHHHHHHHHHHHHHHcHHHTcEEEEEccccGcccHHHHTcccTTccccTTcccccccEHHHHHHHHHHHHHHHHHHHHHHHTccGGccHHHHHHHHHHHHHHHccGGGcccEEcccccHHHHHTTTTcccccTTcTTccEEETTEEEEEccTGGGEEEccccEEEEEEEEEcccEEEcEEEEEccTTTcEEcTTTcEEEETTEEEEEEEEEccccEEEEEEcccEEEcTTc########## DISOP:02AL 1-4, 8-11, 791-792, 815-824| PSIPRED cccccccccccccccEEEccHHHHHHHHHHHHHHHHHHcccccHHHHcccHHHHHHHHHHHHHcccccccEEEHHHHHHHHHHHHcccHHHHHHHHHHHHccHHHccccEEcccccccccccccccHHHHHHHHHHHHHHHHHHHcccccccccccccccEEccEEEcccccEEEEEcccEEEEccccccccccHHHHHHHHHHHHccccccHHHHHHHccccccccccEEEccHHHHHHHHccccEEEEEEEEEEEEccccEEEEEEEccccccHHHHHHHHHHHHHccccccHHHHHHccccccEEEEEEEccccHHHHHHHHHHHHHHHEEEEcEEEEEEccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHccccHHHHHHHHcccHHHHHcccHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHccccccEEEccHHHccHHHHcccccEEEEEEccccEEEccHHHccccccccccEEcccccccccEEEEEEEccccEEEEEEccccEEEEEHHHccccccccccEEEEEccccccccEEEEEEEEccccccccccEEEEEEcccEEEEEEHHHHHccccccEEEEEcccccEEEEEEEcccccEEEEEEccccEEEEEHHHccccccccccEEEEEEccccEEEEEEEEcccccEEEEEEEEcccEEcccHHHHHHccccccEEEEEEEccccccEEEEEEEccccEEEEEEcccEEEEEEHHHccccccccccEEEEEEccccEEEEEEEEccccccccc //