Halobacterium sp. NRC-1 (halo0)
Gene : polA2
DDBJ :polA2 DNA polymerase type II large chain
Swiss-Prot:DP2L_HALSA RecName: Full=DNA polymerase II large subunit; Short=Pol II; EC=2.7.7.7;Contains: RecName: Full=Hsp-NRC1 polC intein; AltName: Full=Hsp-NRC1 pol2 intein;
Homologs Archaea 45/68 : Bacteria 0/915 : Eukaryota 0/199 : Viruses 0/175 --->[See Alignment]
b.86.1
g.41.5
g.50.1
:1370 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB 938->1051 2cw7A PDBj 3e-04 23.7 %
:RPS:PDB 666->729 2aqcA PDBj 4e-10 27.1 %
:RPS:PDB 928->1071 2cw8A PDBj 5e-19 21.1 %
:RPS:SCOP 676->726 1fp0A1 g.50.1.2 * 1e-05 12.8 %
:RPS:SCOP 698->740 1b71A2 g.41.5.1 * 8e-05 21.1 %
:RPS:SCOP 926->1071 1dq3A1 b.86.1.2 * 4e-17 20.7 %
:HMM:SCOP 926->1122 1dq3A1 b.86.1.2 * 1.1e-24 34.4 %
:RPS:PFM 8->925 PF03833 * PolC_DP2 0.0 61.5 %
:RPS:PFM 1254->1346 PF05463 * Sclerostin 8e-04 35.1 %
:HMM:PFM 6->925 PF03833 * PolC_DP2 0 57.2 898/900
:BLT:SWISS 1->1370 DP2L_HALSA 0.0 100.0 %
:SEG
SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAG20443.1
GT:GENE polA2
GT:PRODUCT DNA polymerase type II large chain
GT:DATABASE GIB00041CH01
GT:ORG halo0
GB:ACCESSION GIB00041CH01
GB:LOCATION complement(1746166..1750278)
GB:FROM 1746166
GB:TO 1750278
GB:DIRECTION -
GB:GENE polA2
GB:PRODUCT DNA polymerase type II large chain
GB:NOTE PolA2
GB:PROTEIN_ID AAG20443.1
GB:DB_XREF GI:10581749
GB:GENE:GENE polA2
LENGTH 1370
SQ:AASEQ MRPTDETYFETLETGLDDAFEVAEAARERGEDPTPNVEIPVAKDMADRVENILGIDGVAERVRDLDGEMSREEAALELVADFVDGRVGDYDTDAGKIEGAVRTAVALLTEGVVAAPIEGIDRVEVNDNDDGTQYVAVYYAGPIRSAGGTAQALSVLVADYARAMLGIDAFKPRDDEIERYAEEVDLYDSETGLQYSPKDAETTFITEHCPVMLDGEATGNEEVDGFRDLERIDTNSPRGGMCLVLAEGIALKAPKIQRYTRNLDEVAWPWLQDLIDGTIGADDADEDTPDAGSDSDATDEGDAPSASTDAEEPPRAAPSDKFLRDLIAGRPVFGHPSKNGGFRLRYGRARNHGNATAGVHPATMHLLDDFLATGTQIKTERPGKAAGIVPVDSIEGPTVKLANGDVRHINDPADALDVRNGVAEILDVGEYLVNYGEFVENNHELAPASYAPEWWIQDLDAAGADVQALRDSPYVDLTAPTADQAMAWATDYDAPLHPAYTYLWHDIDVEQFRALADAVADAHTDASDDDDRGVLVLDHTTTVRETLEALLVTHHQGDDTIRVDDWLPLARSLGVTESLDREWETLSEAAAEWPNAVRAVNEVAPFSVQERAPTRIGNRMGRPEKSESRDLSPAVHTLFPIGDAGGSQRDVADAARYAPDMSDTPGEIPVRVGDRVCPSCDEHTYESRCPDCGDWTDPHYECRDCGAVATPDESGRVECPNCGRDLDNVTTQVIDINDEYHGALRAVGERENAFDQLKGVKGLLSAEKTPEPMAKGVLRAKHDVTAFKDGTVRYDMTDLPVTAVTPAELDVTAGQFRELGYNQDIHGDPLEHDDQLVELRVQDVVLSDGAADHMLKTADFVDDLLTQYYGLDAFYDLDDRDDLVGELVFGMAPHTSAAVVGRVAGFTSASVGYAHPYFHAAKRRNCFHPETNVWFRDESGEWHHDPIETLVEARLDPDTADEDDFGALVQALDGDVFVPSVTEDGEETLQRVEAVSKHPAPDHLLAVETKRGRELTVTPDHSMRRWTGDGIERVDARELTAGDALPAPTQVPGDGETATSELRSESLDGTHPQRRFGDGGSVRTDEVVSVEPVRSSVDHTYSLTVAETNTLVANGLFTGQCDGDEDCVMLLMDGLINFSKSYLPDKRGGRMDAPLVMSSRIDPAEIDDEAHNIDIDREYPREFYEATRELADPEDVADLITLAESTVGTDEEYTGFGHTHATSNIHLGPSLSAYKTLGSMMDKMDAQLELARKLRSVAETDVAERVIEYHFLPDLIGNLRAFSRQETRCLDCGEKYRRMPLSGDCRECGGRVNLTVHEGSVNKYMDTAMRVATEYDCREYTKQRLEIMDRRLESVFEDDTNKQSGISDFM
GT:EXON 1|1-1370:0|
SW:ID DP2L_HALSA
SW:DE RecName: Full=DNA polymerase II large subunit; Short=Pol II; EC=2.7.7.7;Contains: RecName: Full=Hsp-NRC1 polC intein; AltName: Full=Hsp-NRC1 pol2 intein;
SW:GN Name=polC; Synonyms=polA2; OrderedLocusNames=VNG_2338G;
SW:KW Autocatalytic cleavage; Complete proteome; DNA replication;DNA-binding; DNA-directed DNA polymerase; Exonuclease; Hydrolase;Multifunctional enzyme; Nuclease; Nucleotidyltransferase;Protein splicing; Transferase.
SW:EXACT T
SW:FUNC +
BL:SWS:NREP 1
BL:SWS:REP 1->1370|DP2L_HALSA|0.0|100.0|1370/1370|
GO:SWS:NREP 9
GO:SWS GO:0006260|"GO:DNA replication"|DNA replication|
GO:SWS GO:0003677|"GO:DNA binding"|DNA-binding|
GO:SWS GO:0003887|"GO:DNA-directed DNA polymerase activity"|DNA-directed DNA polymerase|
GO:SWS GO:0004527|"GO:exonuclease activity"|Exonuclease|
GO:SWS GO:0016787|"GO:hydrolase activity"|Hydrolase|
GO:SWS GO:0003824|"GO:catalytic activity"|Multifunctional enzyme|
GO:SWS GO:0004518|"GO:nuclease activity"|Nuclease|
GO:SWS GO:0016779|"GO:nucleotidyltransferase activity"|Nucleotidyltransferase|
GO:SWS GO:0016740|"GO:transferase activity"|Transferase|
SEG 514->531|aladavadahtdasdddd|
SEG 871->887|ldafydlddrddlvgel|
SEG 1086->1097|evvsvepvrssv|
BL:PDB:NREP 1
BL:PDB:REP 938->1051|2cw7A|3e-04|23.7|114/537|
RP:PDB:NREP 2
RP:PDB:REP 666->729|2aqcA|4e-10|27.1|59/63|
RP:PDB:REP 928->1071|2cw8A|5e-19|21.1|142/528|
RP:PFM:NREP 2
RP:PFM:REP 8->925|PF03833|0.0|61.5|879/884|PolC_DP2|
RP:PFM:REP 1254->1346|PF05463|8e-04|35.1|77/193|Sclerostin|
HM:PFM:NREP 1
HM:PFM:REP 6->925|PF03833|0|57.2|898/900|PolC_DP2|
RP:SCP:NREP 3
RP:SCP:REP 676->726|1fp0A1|1e-05|12.8|47/70|g.50.1.2|
RP:SCP:REP 698->740|1b71A2|8e-05|21.1|38/44|g.41.5.1|
RP:SCP:REP 926->1071|1dq3A1|4e-17|20.7|145/168|b.86.1.2|
HM:SCP:REP 926->1122|1dq3A1|1.1e-24|34.4|163/169|b.86.1.2|1/1|Hedgehog/intein (Hint) domain|
OP:NHOMO 48
OP:NHOMOORG 45
OP:PATTERN -----------------------111122111111111111111111111111111111111111111 --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
STR:NPRED 258
STR:RPRED 18.8
SQ:SECSTR #########################################################################################################################################################################################################################################################################################################################################################################################################################################################################################################################################################################################################################################################################################cccccccccEEccccccEEcccccTTTccccccccccccccccccccTTTGG#GGGTccccccc################################################################################################################################################################################################cccEcEcTTcEEEEEEETTEEEEEEHHHHHHHHTTGGGcEEETTEEEEEEcccEEEEEEcTTTccEEEEEEEEEEEEEEEEEEEEEEETTccEEEEETTcEEEEEETTEEEEEETTTccTTcEEEEEccccccccccEEEHGGGcTTcEETHHHHHHHHHTTEEEEEEEEEEEEEEEEEEEEEEccccEEEETTE##############################################################################################################################################################################################################################################################
DISOP:02AL 1-5, 278-290, 622-633, 1054-1063|
PSIPRED ccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHccccHHHHHHHHHHHHHcHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHccccccEEEEEEEccccccEEEEEEccccccccHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHccEEEccccccccccccccccccccccccHHHHHHHHHHHHHHHcHHHHHHHHHcccccHHHHHHHHccccccccccccccccccHHHHHccccccccHHccccccEEcccHHHHHHHHccccccccccccccEEEEEcHHHHcEEEEcccccEEEEEEEcEEEccEEEEEEcccccEEEEEEccccccEEEEccccEEEEccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHccccccccccccEEcccHHHHHHHHHHHHHcccccccccccccEEccccHHHHHHHHHHcccEEEcccEEEEEEcHHHHHHHcccHHHHHHHHHHHHHHccHHHHHHHHHHHccEEEEccccEEEccccccccccccccccccccEEEcHHHcccccccHHHHHHccccccccccEEEEEEEEEEcccccccccEEEccccccccccEEEccccccccccccccccccccccccccccEEEEccHHHHHHHHHHHHHHccccHHEEHHHHHHccccccccHHHHHHHHHHccEEEEcccEEEEccccccEEEEEHHHHcccHHHHHHcccccccccccccccccEEEEEEEEEEEcHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHEEEEEEEEccccccHHHEEEEEEEEEEEEEcccHHHHHHHccccccccEEEEEcccccEEEEEHHHHHHHHccccccEEcccccEEEEccccEEEEEEcccccEEEEEEEEEEEccccccEEEEEEccccEEEEcccEEEEEEEccEEEEEEHHHcccccEEEEccccccccccccccccccccccccccccHHccccEEEEEEEEEEEEEccccEEEEEEEcccccEEEEcEEEEccccHHHHHHHHHHHHHHHHHHHccccccccccccEEEEEEEcHHHHHHHHHcHHHHHHccHHHHHHHHccccHHHHHHHHHHHHHHcccccEEEccccccccHHHHccccEEHHHcccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHccHHHHHHHHHHccccEEEEEccccccccccccccccccccEEEEEEHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHccccccccccHHHcc
//
[GTOP]
