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Lactobacillus salivarius UCC118 (lsal0)
Gene : ABD98871.1
DDBJ      :             Transposase ISLasa3a, IS200 family
Swiss-Prot:             

Homologs  Archaea  18/68 : Bacteria  145/915 : Eukaryota  0/199 : Viruses  0/175   --->[See Alignment]
d.58.57
:155 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   7->130 2ec2F PDBj 5e-19 34.1 %
:RPS:PDB   6->154 2a6oA PDBj 9e-29 29.3 %
:RPS:SCOP  6->131 2a6mA1  d.58.57.1 * 7e-27 30.6 %
:HMM:SCOP  2->132 2a6oA1 d.58.57.1 * 2e-43 44.2 %
:RPS:PFM   17->129 PF01797 * Transposase_17 2e-19 44.6 %
:HMM:PFM   13->130 PF01797 * Transposase_17 1.2e-42 42.4 118/121  
:BLT:SWISS 7->153 T200_SALTY 1e-37 46.9 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID ABD98871.1 GT:GENE ABD98871.1 GT:PRODUCT Transposase ISLasa3a, IS200 family GT:DATABASE GIB00337CH01 GT:ORG lsal0 GB:ACCESSION GIB00337CH01 GB:LOCATION complement(57833..58300) GB:FROM 57833 GB:TO 58300 GB:DIRECTION - GB:PRODUCT Transposase ISLasa3a, IS200 family GB:NOTE COG0675 [L] Transposase and inactivated derivatives GB:PROTEIN_ID ABD98871.1 GB:DB_XREF GI:90820232 LENGTH 155 SQ:AASEQ MANKLNSLAHTTWLCKYHIVFTPKYRRKIIYYQYRKDLIEIIKLLCQYKGVKIIEGHMMPDHVHLLVSIPPKQSVSSFMGYLKGKSALMMFDRHANLKYKFGNRYFWSEGYYVSTVGLNEQTIRKYIRDQEKHDLSIDKLTTKEYSDPFKGNKLK GT:EXON 1|1-155:0| BL:SWS:NREP 1 BL:SWS:REP 7->153|T200_SALTY|1e-37|46.9|147/152| SEG 24->36|kyrrkiiyyqyrk| BL:PDB:NREP 1 BL:PDB:REP 7->130|2ec2F|5e-19|34.1|123/129| RP:PDB:NREP 1 RP:PDB:REP 6->154|2a6oA|9e-29|29.3|147/152| RP:PFM:NREP 1 RP:PFM:REP 17->129|PF01797|2e-19|44.6|112/119|Transposase_17| HM:PFM:NREP 1 HM:PFM:REP 13->130|PF01797|1.2e-42|42.4|118/121|Transposase_17| GO:PFM:NREP 3 GO:PFM GO:0003677|"GO:DNA binding"|PF01797|IPR002686| GO:PFM GO:0004803|"GO:transposase activity"|PF01797|IPR002686| GO:PFM GO:0006313|"GO:transposition, DNA-mediated"|PF01797|IPR002686| RP:SCP:NREP 1 RP:SCP:REP 6->131|2a6mA1|7e-27|30.6|124/130|d.58.57.1| HM:SCP:REP 2->132|2a6oA1|2e-43|44.2|129/0|d.58.57.1|1/1|Transposase IS200-like| OP:NHOMO 1003 OP:NHOMOORG 163 OP:PATTERN --1---1--111--17--------1221--61-------------------7B-------1-12---- ---------------------1----------1-------------------------------------2----1-----1----------------------------------------------------------------3-2-54----------------1---------------19-----------------------48-----------2--------1----1--1-22---22-322-1------5--1--GG---1-----------22--212---1-1--1---------------44322222-2--1---------2-A122-2-A-32-1-1--321112--21----1-13----------------21---1---------------------------------4------------1---------------1--------------------------B-----------------------------------------------------------1--------------------1--4---31----1-1-----------3-1---------------------2----------1------1-1---18-2-----24---1----9---1-----------------11J-1-1--------821-1116---------1--8-7--6----4--Q6Q6----2------3*rm5***uF2E-------------------------------3-------------------------------------------S47447--------------------------------1--1----------------------------------3-3-2--- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 153 STR:RPRED 98.7 SQ:SECSTR #ccccEcccccEEccEEEEEEccGGGcccccHHHHHHHHHHHHHHHHHTTcEEEEEEEccccEEEEEEccTTTcHHHHHHHHHHHHHHHHHHHcTHHHHcccTTcccccccEEEEEcccTHHHHHHHHTccccccHHHHHHHHHHHHTcccccc# DISOP:02AL 1-5,130-141,153-156| PSIPRED ccHHHHccccEEEEEEEEEEEEEcccHHHHHHHHHHHHHHHHHHHHHHcccEEEEEEEccccEEEEEEccccccHHHHHHHHHHHHHHHHHHHcHHHHHHccccccccccEEEEEEcccHHHHHHHHHHHcccccHHHHcccccccccccccccc //