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Lactobacillus salivarius UCC118 (lsal0)
Gene : ABD98897.1
DDBJ      :             Transcriptional regulator, DeoR family
Swiss-Prot:             

Homologs  Archaea  1/68 : Bacteria  488/915 : Eukaryota  2/199 : Viruses  0/175   --->[See Alignment]
a.4.5c.124.1
:258 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:RPS:PDB   2->56 3bp8B PDBj 1e-05 9.3 %
:RPS:PDB   40->241 3dlxB PDBj 4e-20 11.9 %
:RPS:SCOP  5->56 1lvaA4  a.4.5.35 * 1e-08 15.4 %
:RPS:SCOP  79->244 1t5oA  c.124.1.5 * 3e-13 8.8 %
:HMM:SCOP  3->82 1stzA1 a.4.5.51 * 1.4e-06 23.8 %
:HMM:SCOP  73->236 1lk5A1 c.124.1.4 * 9.5e-19 26.1 %
:RPS:PFM   7->56 PF08220 * HTH_DeoR 6e-06 38.0 %
:RPS:PFM   79->232 PF00455 * DeoR 6e-14 34.9 %
:HMM:PFM   79->232 PF00455 * DeoR 5.1e-25 31.6 152/157  
:HMM:PFM   7->57 PF08220 * HTH_DeoR 9.6e-15 39.2 51/57  
:BLT:SWISS 4->232 GLCR_BACSU 4e-28 30.8 %
:PROS 7->41|PS00894|HTH_DEOR_1

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID ABD98897.1 GT:GENE ABD98897.1 GT:PRODUCT Transcriptional regulator, DeoR family GT:DATABASE GIB00337CH01 GT:ORG lsal0 GB:ACCESSION GIB00337CH01 GB:LOCATION 94842..95618 GB:FROM 94842 GB:TO 95618 GB:DIRECTION + GB:PRODUCT Transcriptional regulator, DeoR family GB:NOTE COG1349 [KG] Transcriptional regulators of sugar metabolism GB:PROTEIN_ID ABD98897.1 GB:DB_XREF GI:90820258 LENGTH 258 SQ:AASEQ MLSQEQRLEEIKEMLAKKHKLTTHELADHFGIAFDTARRDVLRLTSTGQAARIHGGLMEIKFNNVPGFVTRSHIQSPIKAKMARLAREEFNPSGLYFVGASTTLMQMCEQLGQVNTTIMTNSIDNAVRLMLNKLPEVELLGGKIDKGNRYTYSMETLSQLDNITFDAAFIGTSKIQPDGVMVVDSYDAAIAKKVVERSRKVILIAQKYKFVTNNSSPYKSANLKDIDVLITDVPLEEKYRKYFKPDIKIKYVKEDETK GT:EXON 1|1-258:0| BL:SWS:NREP 1 BL:SWS:REP 4->232|GLCR_BACSU|4e-28|30.8|227/258| PROS 7->41|PS00894|HTH_DEOR_1|PDOC00696| RP:PDB:NREP 2 RP:PDB:REP 2->56|3bp8B|1e-05|9.3|54/380| RP:PDB:REP 40->241|3dlxB|4e-20|11.9|202/465| RP:PFM:NREP 2 RP:PFM:REP 7->56|PF08220|6e-06|38.0|50/56|HTH_DeoR| RP:PFM:REP 79->232|PF00455|6e-14|34.9|152/157|DeoR| HM:PFM:NREP 2 HM:PFM:REP 79->232|PF00455|5.1e-25|31.6|152/157|DeoR| HM:PFM:REP 7->57|PF08220|9.6e-15|39.2|51/57|HTH_DeoR| GO:PFM:NREP 3 GO:PFM GO:0003700|"GO:transcription factor activity"|PF08220|IPR001034| GO:PFM GO:0005622|"GO:intracellular"|PF08220|IPR001034| GO:PFM GO:0006355|"GO:regulation of transcription, DNA-dependent"|PF08220|IPR001034| RP:SCP:NREP 2 RP:SCP:REP 5->56|1lvaA4|1e-08|15.4|52/60|a.4.5.35| RP:SCP:REP 79->244|1t5oA|3e-13|8.8|159/340|c.124.1.5| HM:SCP:REP 3->82|1stzA1|1.4e-06|23.8|80/87|a.4.5.51|1/1|"Winged helix" DNA-binding domain| HM:SCP:REP 73->236|1lk5A1|9.5e-19|26.1|142/150|c.124.1.4|1/1|NagB/RpiA/CoA transferase-like| OP:NHOMO 1312 OP:NHOMOORG 491 OP:PATTERN ------------------------2------------------------------------------- 2---2122111111-------2---2------111112121--11---11--4241-3--1-2-411-322----1--1---------------------12--12-2-7--------------------------111------------------------------1------------------11-3-311111112-211111553323122-112222444343582222222222222224321222-1491-32233--661411--2322232222344222222222224444444444444321221322531-662212222321-2--142111-1--111----1--1--12223221---1----------112---1111111211111113-1111112116--5444351764322----1224134312111111111111---1-------------------------------1---11111233333211113354111111333221---1111-1111-1122-------21-----------1---1---1---1---1-------1------1-----------------------------224----1-121-1--------1-1--111-------------52652237658797777-6877676767697777773677453228487888887787877876377663-544444344444----------------14333423123223671----------2-1111-3111----1312----------333322222221332111111----------2---------------------1---1-1------1--------31--12111--- -------------1-----------------------------------------------------------------------------------------------------------------------------------------------------1----------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 255 STR:RPRED 98.8 SQ:SECSTR TcHHHHHHHHHHHHHHHHHcccccHHHHHHHHTTcTTcccTTcccGGGccccGGGccEEEEcccccccccccccccHHHHHHHHHHGGGccTTEEEEEcTTHHHHHGGGccTTccEEEEETTTEEEEccccTTcccTTcccccEEEEEEEccHHHHHHHHHTTcccEEEEcccEEETTccEEccccTcTTHHHHTccTTcEEEEEcccEEGGGEEccccccccccccEEEcccEEEEEETTEEEETccEEEEccc### DISOP:02AL 1-5,255-259| PSIPRED cccHHHHHHHHHHHHHHcccEEHHHHHHHHcccHHHHHHHHHHHHHcccEEEEEcEEEEccccccccHHHHHHHHHHHHHHHHHHHHHHcccccEEEEcccHHHHHHHHHccccccEEEEccHHHHHHHHHccccEEEEEccEEEccccEEEcHHHHHHHHcccccEEEEEEccccccccccccHHHHHHHHHHHHHcccEEEEEEcHHcccccEEEEEEEcHHHccEEEccccccHHHHHHHHcccEEEEEEccccc //