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Lactobacillus salivarius UCC118 (lsal0)
Gene : ABD98911.1
DDBJ      :             Hypothetical secreted protein
Swiss-Prot:             

Homologs  Archaea  1/68 : Bacteria  545/915 : Eukaryota  3/199 : Viruses  1/175   --->[See Alignment]
d.3.1d.7.1
:516 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   34->77 2djpA PDBj 8e-05 36.4 %
:BLT:PDB   250->292 1e01A PDBj 8e-04 41.9 %
:BLT:PDB   413->491 2k1gA PDBj 5e-12 41.8 %
:RPS:PDB   34->85 2djpA PDBj 1e-09 30.8 %
:RPS:PDB   90->136 1e01A PDBj 2e-04 21.3 %
:RPS:PDB   252->292 1e01A PDBj 7e-09 43.9 %
:RPS:SCOP  34->77 1y7mA2  d.7.1.1 * 7e-08 25.0 %
:RPS:SCOP  90->136 1e0gA  d.7.1.1 * 7e-05 21.3 %
:RPS:SCOP  252->292 1e0gA  d.7.1.1 * 3e-09 43.9 %
:RPS:SCOP  405->509 2evrA2  d.3.1.16 * 2e-29 26.7 %
:HMM:SCOP  31->79 1y7mA2 d.7.1.1 * 1.7e-09 37.5 %
:HMM:SCOP  90->139 1e0gA_ d.7.1.1 * 1.4e-10 47.9 %
:HMM:SCOP  248->295 1e0gA_ d.7.1.1 * 5.2e-09 45.8 %
:HMM:SCOP  389->516 2evrA2 d.3.1.16 * 4.7e-42 43.8 %
:RPS:PFM   34->76 PF01476 * LysM 9e-04 37.2 %
:RPS:PFM   252->293 PF01476 * LysM 3e-06 54.8 %
:RPS:PFM   413->505 PF00877 * NLPC_P60 2e-19 52.7 %
:HMM:PFM   34->77 PF01476 * LysM 9.7e-14 37.2 43/44  
:HMM:PFM   94->136 PF01476 * LysM 3.9e-18 42.9 42/44  
:HMM:PFM   252->292 PF01476 * LysM 1.9e-10 43.9 41/44  
:HMM:PFM   413->510 PF00877 * NLPC_P60 3.6e-29 44.9 98/105  
:BLT:SWISS 34->107 CIH1_COLLN 2e-08 43.2 %
:BLT:SWISS 251->292 YOCH_BACSU 1e-05 46.5 %
:BLT:SWISS 404->512 P54_ENTFC 2e-34 58.7 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID ABD98911.1 GT:GENE ABD98911.1 GT:PRODUCT Hypothetical secreted protein GT:DATABASE GIB00337CH01 GT:ORG lsal0 GB:ACCESSION GIB00337CH01 GB:LOCATION complement(109121..110671) GB:FROM 109121 GB:TO 110671 GB:DIRECTION - GB:PRODUCT Hypothetical secreted protein GB:NOTE COG1388 [M] FOG: LysM repeat GB:PROTEIN_ID ABD98911.1 GB:DB_XREF GI:90820272 LENGTH 516 SQ:AASEQ MKKTAQKLLVGTVGAAGVLLASSTAANADSTTTHKVKQNETVWALSKKYGVSIQSIEKLNRINSNHLIITGQTLQIPSKDGSQTVNKNDNKSTYTIKSGDTLWRIAQNNHISLDELLSLNNLNASDIIYPGQVIKLTSAAATSTSNTQQQVQDKAAVTTPATDNQSSQAQATSASSSSQAVSTAQNSSAATTAASSSVTTPATSQAATTSSSSSVTQQPAASSSSAVQQSSSQVTTQSSSEVKDDNAQKVQYTAKAGDSLYSIAQSFGVSIDSLRSNNNLGATLLPGQTLTIVNPTKTPSQEESSSNSVATNNTATTSSAAQSSSQQSVANNSVAQTSSSQQQTVTTPAASSSSAASSSSVAQTNNTQQATTTNTAATNNNATTVNTSNVTTTTNTGSASASAIISYAQSFIGVPYVWGGSTPSGFDCSGLVQYVYAHYGVNLPRVTTAQENAGTVIPVSAAQPGDLYFWGAKGSSYHVAIATGGGSFIHAPEPGESVKVGSTQYFQPSFAVRVLQ GT:EXON 1|1-516:0| BL:SWS:NREP 3 BL:SWS:REP 34->107|CIH1_COLLN|2e-08|43.2|74/230| BL:SWS:REP 251->292|YOCH_BACSU|1e-05|46.5|42/287| BL:SWS:REP 404->512|P54_ENTFC|2e-34|58.7|109/516| SEG 21->33|asstaanadsttt| SEG 111->128|isldellslnnlnasdii| SEG 137->150|tsaaatstsntqqq| SEG 164->240|nqssqaqatsassssqavstaqnssaattaasssvttpatsqaattsssssvtqqpaassssavqqsssqvttqsss| SEG 304->403|sssnsvatnntattssaaqsssqqsvannsvaqtsssqqqtvttpaassssaassssvaqtnntqqatttntaatnnnattvntsnvttttntgsasasa| BL:PDB:NREP 3 BL:PDB:REP 34->77|2djpA|8e-05|36.4|44/77| BL:PDB:REP 250->292|1e01A|8e-04|41.9|43/48| BL:PDB:REP 413->491|2k1gA|5e-12|41.8|79/129| RP:PDB:NREP 3 RP:PDB:REP 34->85|2djpA|1e-09|30.8|52/77| RP:PDB:REP 90->136|1e01A|2e-04|21.3|45/48| RP:PDB:REP 252->292|1e01A|7e-09|43.9|41/48| RP:PFM:NREP 3 RP:PFM:REP 34->76|PF01476|9e-04|37.2|43/44|LysM| RP:PFM:REP 252->293|PF01476|3e-06|54.8|42/44|LysM| RP:PFM:REP 413->505|PF00877|2e-19|52.7|93/100|NLPC_P60| HM:PFM:NREP 4 HM:PFM:REP 34->77|PF01476|9.7e-14|37.2|43/44|LysM| HM:PFM:REP 94->136|PF01476|3.9e-18|42.9|42/44|LysM| HM:PFM:REP 252->292|PF01476|1.9e-10|43.9|41/44|LysM| HM:PFM:REP 413->510|PF00877|3.6e-29|44.9|98/105|NLPC_P60| GO:PFM:NREP 2 GO:PFM GO:0016998|"GO:cell wall macromolecule catabolic process"|PF01476|IPR018392| GO:PFM GO:0016998|"GO:cell wall macromolecule catabolic process"|PF01476|IPR018392| RP:SCP:NREP 4 RP:SCP:REP 34->77|1y7mA2|7e-08|25.0|43/48|d.7.1.1| RP:SCP:REP 90->136|1e0gA|7e-05|21.3|45/48|d.7.1.1| RP:SCP:REP 252->292|1e0gA|3e-09|43.9|41/48|d.7.1.1| RP:SCP:REP 405->509|2evrA2|2e-29|26.7|105/148|d.3.1.16| HM:SCP:REP 31->79|1y7mA2|1.7e-09|37.5|48/0|d.7.1.1|1/3|LysM domain| HM:SCP:REP 90->139|1e0gA_|1.4e-10|47.9|48/48|d.7.1.1|2/3|LysM domain| HM:SCP:REP 248->295|1e0gA_|5.2e-09|45.8|48/48|d.7.1.1|3/3|LysM domain| HM:SCP:REP 389->516|2evrA2|4.7e-42|43.8|128/0|d.3.1.16|1/1|Cysteine proteinases| OP:NHOMO 1296 OP:NHOMOORG 550 OP:PATTERN -------------------------------------------------------------1------ -112834444444444422-2H334533333487BC78AD545E52314332132112224322654BDA61111111-2642--111111--------21321-132-1---------------222221-12-111111---41---1111--111----11-1-111--1-----1----31311---32533444445445446532554654443453223223234221----------1-------34553343121546622311-121111------------111-11-1--------1-----11---2-1-1215733345643525C22132232133-16115412112-121111--21111--1------11--11111111-------------1---11-1-1-------1---1--11--11-11111---------------------------------------------------1-2222222222222222222222222222222221222211222221221222-11122222222221-121----1-112312221333122212------211----1111---1-------1---22222--------1-1111-111112-1112----1---1------33221313333333233-3333333333333333333333111121111111111111111223322232-222222222222---1---------1--2----111-----1--1----------1-33332233222221333-----------1121111111-1122222222222222------------------1---------------------------1------------ --------------------------------------------------------------------------------------------------------------------------------------------------------------1-----------------------------1-----1---- --------------1---------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 237 STR:RPRED 45.9 SQ:SECSTR #################################EcccTTccHHHHHHHHTccHHHHHHHHTccccccGGGcccEEEEEEcccccc####ccEEEEEcTTccHHHHHHHHT##ccHHHHHHHccccccccTTEEEEE#################################################################################################################EEEEEcTTccHHHHHHHHTccHHHHHHHccccccccTTEEEEE##EEEcccc#############################################################################################################TTTcccccccccTTcccHHHHHHHHHHHTcccccccHHHHGGGcEEEcGGGccTTEEEEEEETTTEEEEEEEEETTEEEEEccTTcccEE################ DISOP:02AL 1-3,83-87,142-197,199-252,296-371| PSIPRED ccHHHHHHHHHHHHHHHHHHccccccccccccEEEEcccccHHHHHHHHcccHHHHHHHcccccccEEEcccEEEEcccccccccccccccEEEEEcccccHHHHHHHHcccHHHHHccccccHHHEEccccEEEEEEccccccccHHHHHHHHcccccccccccccHHHHccccccccHHHHccccccccccccccccccccccccccccccccccccccccHHHHHHHccccccccHHHHHccccEEEEEEEEccccHHHHHHHHcccHHHHHHccccccEEccccEEEEccccccccccccccccccccccccccHHHcccHHHHHccccccccccccccEEEccccccccccccccccccccccccccccccccccccEEEEcccEEEEccccccHHHHHHHHHHHHccccEEccccccccEEHHHHHHHHHHHcccccccccHHHHHccccccHHHccccEEEEEccccccEEEEEEEcccEEEEEcccccEEEEEccccHHccccEEEEc //