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Lactobacillus salivarius UCC118 (lsal0)
Gene : ABD98935.1
DDBJ      :             ABC transporter permease protein
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  216/915 : Eukaryota  1/199 : Viruses  0/175   --->[See Alignment]
:298 amino acids
:PSIPRED
:DISOPRED
:RPS:PFM   126->224 PF02653 * BPD_transp_2 8e-11 38.4 %
:HMM:PFM   8->275 PF02653 * BPD_transp_2 8.8e-34 27.0 259/267  
:BLT:SWISS 24->210 Y368_RICPR 2e-15 31.8 %
:BLT:SWISS 206->298 F16PA_THIDA 4e-05 32.3 %
:TM
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID ABD98935.1 GT:GENE ABD98935.1 GT:PRODUCT ABC transporter permease protein GT:DATABASE GIB00337CH01 GT:ORG lsal0 GB:ACCESSION GIB00337CH01 GB:LOCATION 135980..136876 GB:FROM 135980 GB:TO 136876 GB:DIRECTION + GB:PRODUCT ABC transporter permease protein GB:NOTE COG0390 [R] ABC-type uncharacterized transport system, permease component GB:PROTEIN_ID ABD98935.1 GB:DB_XREF GI:90820296 LENGTH 298 SQ:AASEQ MSLVTSAIGQGLLWGILALGLFLTFRILNFPDMTVEGTFPFGAAVCVSALVHGVNPIVATALSFGAGLLTGLMTGLLYTKGRIPILLAGILVMTGIYSINLRILGRANVGLMHQKTLFSPEFLKNLPDGFDSVCVGIIFTIVIVILLAVFLNTDIGQAFIATGDNEKMARSLGIHTDNTKILGLMISNGLIGLAGGLISQNNGYADVNMGVGTIVIGLAAIIIGEVAYGELSLTARLVAVVVGSILYRFVLLIVLKLGFSTNDYKLLSAIILAFCLMLPLLQKKFHVNKVLKKGVERP GT:EXON 1|1-298:0| BL:SWS:NREP 2 BL:SWS:REP 24->210|Y368_RICPR|2e-15|31.8|179/280| BL:SWS:REP 206->298|F16PA_THIDA|4e-05|32.3|93/337| TM:NTM 8 TM:REGION 7->29| TM:REGION 48->70| TM:REGION 86->108| TM:REGION 129->151| TM:REGION 180->201| TM:REGION 207->229| TM:REGION 236->258| TM:REGION 263->282| SEG 9->23|gqgllwgilalglfl| SEG 65->81|gaglltglmtgllytkg| RP:PFM:NREP 1 RP:PFM:REP 126->224|PF02653|8e-11|38.4|99/271|BPD_transp_2| HM:PFM:NREP 1 HM:PFM:REP 8->275|PF02653|8.8e-34|27.0|259/267|BPD_transp_2| GO:PFM:NREP 3 GO:PFM GO:0005215|"GO:transporter activity"|PF02653|IPR001851| GO:PFM GO:0006810|"GO:transport"|PF02653|IPR001851| GO:PFM GO:0016020|"GO:membrane"|PF02653|IPR001851| OP:NHOMO 265 OP:NHOMOORG 217 OP:PATTERN -------------------------------------------------------------------- -----1-1111--------------------------------------------11-----------------------------------------------------------------------------1---------------------------------------------------------1----------------1--------1221---------11--------------------112122-1111221122111111---22213222111111111212111111112111111322222222--1-12222222-21-211-------1-1-2--33-3111--------11-------111-1-------------11111111111---------11--111-11-11111------------------------------1------------1111-11---11-----------111-1-1111--1111111-1111111-21121--1111-1111-------------1-----------1---1-111---1---11-1--1----------1-------------------------------1-----1----------------------------------------------------------------------------------------------------------------------------------1-------------1----------111--1111--------------------------11111111-11-----------------1-------------------------------------------11---1----1- --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1---------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- DISOP:02AL 1-1,288-288,291-291,294-299| PSIPRED cHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHcccccccHHHHHHHHHHHHHHHHHHHHHHcccccEEEEEEcccHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHcccc //