[GTOP] [HELP] [ORGANISMS] [SEARCH] [SUMMARY]
Lactobacillus salivarius UCC118 (lsal0)
Gene : ABD98949.1
DDBJ      :             ABC transporter permease protein
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  513/915 : Eukaryota  2/199 : Viruses  0/175   --->[See Alignment]
f.58.1
:233 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   17->171 3dhwA PDBj 1e-24 40.4 %
:RPS:PDB   54->199 3dhwA PDBj 4e-23 34.2 %
:RPS:SCOP  23->199 3dhwA1  f.58.1.1 * 4e-09 35.6 %
:RPS:PFM   73->143 PF00528 * BPD_transp_1 8e-04 36.6 %
:HMM:PFM   47->230 PF00528 * BPD_transp_1 3.6e-18 22.5 178/185  
:BLT:SWISS 25->231 METI_VIBCH 4e-27 47.3 %
:TM
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID ABD98949.1 GT:GENE ABD98949.1 GT:PRODUCT ABC transporter permease protein GT:DATABASE GIB00337CH01 GT:ORG lsal0 GB:ACCESSION GIB00337CH01 GB:LOCATION 149682..150383 GB:FROM 149682 GB:TO 150383 GB:DIRECTION + GB:PRODUCT ABC transporter permease protein GB:NOTE COG2011 [P] ABC-type metal ion transport system, permease component GB:PROTEIN_ID ABD98949.1 GB:DB_XREF GI:90820310 LENGTH 233 SQ:AASEQ MTSIIEKYLPNVANLGWTGDSGWWTSIIQTLYMTLWPAIFGGILGLIFGIILVVTKPKGILENKLWFSICDKLVSLFRAVPFIILLAVIAPVTKLIVGTQIGTTAAIVPLSLGVFPFYARQVQVALESVNNGKVEAAQALGATNTDIILDVYLREVRSELVRISTVTLISLVGLTAMAGAIGAGGLGNTAISYGYNRFNNDITIVATLLVLLIVIVIQLVGDFLANILNHQKR GT:EXON 1|1-233:0| BL:SWS:NREP 1 BL:SWS:REP 25->231|METI_VIBCH|4e-27|47.3|207/225| TM:NTM 5 TM:REGION 35->56| TM:REGION 71->93| TM:REGION 98->120| TM:REGION 161->183| TM:REGION 203->225| SEG 39->52|ifggilglifgiil| SEG 173->191|gltamagaigagglgntai| SEG 202->220|itivatllvlliviviqlv| BL:PDB:NREP 1 BL:PDB:REP 17->171|3dhwA|1e-24|40.4|151/203| RP:PDB:NREP 1 RP:PDB:REP 54->199|3dhwA|4e-23|34.2|146/203| RP:PFM:NREP 1 RP:PFM:REP 73->143|PF00528|8e-04|36.6|71/195|BPD_transp_1| HM:PFM:NREP 1 HM:PFM:REP 47->230|PF00528|3.6e-18|22.5|178/185|BPD_transp_1| GO:PFM:NREP 3 GO:PFM GO:0005215|"GO:transporter activity"|PF00528|IPR000515| GO:PFM GO:0006810|"GO:transport"|PF00528|IPR000515| GO:PFM GO:0016020|"GO:membrane"|PF00528|IPR000515| RP:SCP:NREP 1 RP:SCP:REP 23->199|3dhwA1|4e-09|35.6|177/203|f.58.1.1| OP:NHOMO 688 OP:NHOMOORG 515 OP:PATTERN -------------------------------------------------------------------- -----1111111-1-----------2------1121112-----12-11111--1111-----11--11111111----112-------------------1---------------11111111----------------------------------------------------------1-1------111111111111111113-2211113112143222222223222222222222221222112111111111132111112-11211111111111111111111111111111111111111111111111-2112222222212--1221---111111----11-1-11-1-11-1-11---111-111-11-111---211-111111111112---1--1-1-1--21121111111111-----11211---11111111------12-----------------------------------111112222221222122212222112222122--111--1114-111--------11111-11---------------1-------------------1----1111111111-1--------1-----1-1-1-----1--------------------------------33231311111111111-1111111111111111111454311112222222222222222211111111-322222222222--1-111111111---1-11111111-11111122222221111-22222232222221222111111111-1111111111111111111111111111---1------------------------------------------------------- --------------------------------------------------------------------------------------------------------------------------------------------------------------------------6-----------------1---------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 179 STR:RPRED 76.8 SQ:SECSTR ################HHHHHHHH####HHHHHHHHHHHHHHHTTGGGGGGGGGGTTccccccccHHHHHHHHHHHHHHccHHHHHHHHHHHHHHTTcccccHHHHHHHHHHHHHHHHHHHHHHHHHHccTTTTTHHHHHTccTHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHcccTTccHHHHHHHHHHHcccc################################## DISOP:02AL 231-234| PSIPRED cHHHHHHHccHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEcccccccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccEEccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc //