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Lactobacillus salivarius UCC118 (lsal0)
Gene : ABD99036.1
DDBJ      :             ABC transporter permease protein
Swiss-Prot:             

Homologs  Archaea  16/68 : Bacteria  310/915 : Eukaryota  7/199 : Viruses  0/175   --->[See Alignment]
:370 amino acids
:PSIPRED
:DISOPRED
:RPS:PFM   193->333 PF01061 * ABC2_membrane 5e-19 36.9 %
:HMM:PFM   170->333 PF01061 * ABC2_membrane 7.9e-33 33.5 158/208  
:HMM:PFM   120->157 PF11050 * Viral_env_E26 0.00059 36.8 38/206  
:BLT:SWISS 1->339 ABCGK_DICDI 8e-17 22.8 %
:TM
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID ABD99036.1 GT:GENE ABD99036.1 GT:PRODUCT ABC transporter permease protein GT:DATABASE GIB00337CH01 GT:ORG lsal0 GB:ACCESSION GIB00337CH01 GB:LOCATION 274863..275975 GB:FROM 274863 GB:TO 275975 GB:DIRECTION + GB:PRODUCT ABC transporter permease protein GB:NOTE COG0842 [V] ABC-type multidrug transport system, permease component GB:PROTEIN_ID ABD99036.1 GB:DB_XREF GI:90820397 LENGTH 370 SQ:AASEQ MKTLVIAKKVVIELIRDKRTVLLMFVAPLLILCLLNLMFSASTKTKVTIGTVDVNNQINRKMDQVDGTTVKKYESEKHAKKDLDANSLDGVISYKSKQYDVTYANLDVSKTVMTKKVLESALMKDNVSKLQSMVVKQGQVIAKLTGQQESVKMNKSKISIKNHYNYGNSKTNFFDKMAPILIGFFVFFFVFLISGMALLKERISGTLERLLATPVKRSEIVYGYMLGYGLMALAQASLITVVGIKLLDIEIIGSIFSVIIIAVLLGFVALAFGILLSTFASSEFQMMQFIPLVVVPQIFFSGIIPLDSMADWAQRIGKILPLTYAGEALSAIIMQGAGLIDVGKDILVLIIFLVVLLILNILGLKRYRKV GT:EXON 1|1-370:0| BL:SWS:NREP 1 BL:SWS:REP 1->339|ABCGK_DICDI|8e-17|22.8|334/730| TM:NTM 6 TM:REGION 12->34| TM:REGION 175->197| TM:REGION 223->245| TM:REGION 256->278| TM:REGION 287->309| TM:REGION 335->357| SEG 184->191|ffvfffvf| SEG 249->261|ieiigsifsviii| SEG 346->364|ilvliiflvvllilnilgl| RP:PFM:NREP 1 RP:PFM:REP 193->333|PF01061|5e-19|36.9|141/208|ABC2_membrane| HM:PFM:NREP 2 HM:PFM:REP 170->333|PF01061|7.9e-33|33.5|158/208|ABC2_membrane| HM:PFM:REP 120->157|PF11050|0.00059|36.8|38/206|Viral_env_E26| GO:PFM:NREP 1 GO:PFM GO:0016020|"GO:membrane"|PF01061|IPR013525| OP:NHOMO 375 OP:NHOMOORG 333 OP:PATTERN --------111111--1------1--------11--------1-----1-----1---11----1--- -12-2-------1--11-------11-----11---1112-------1----1-------111----111------------1-----111---------1--------1---------------21-----1-21----122221---1-------------1-----1----------------------1-11111111--111111-11--1-1--11-1111111111----1----------11121--1-11-1---11--11-11--1111111-----11----------------------------------1--1-1112122-1-----------------2-21-1-1--11---1---1--1--1-----1-1111--22121-------1--1------1---------2-1-11-1122--1--1-1----1--------------11-------------------------------1----1---1-------------1------1--1111--111-------11-----1---1----------11-111-11--1111-------1211-1------2-1---1----------------------112---12---11111-111111111-111-------------111111-1111111111-1111111111111111111222-11111111111111111111111111-1--1--1111--111-----1--11111--1-11111----------------------1---1---1---------1111--1-1--111-111111-11--------------------------------------------------------------------1---1 ----1--------1------------------------------------------------------------------------------------------------1------------------------------------------------------B-223----------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- DISOP:02AL 107-107,143-157,370-371| PSIPRED ccHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHccccccEEEEEEEcccHHHHHHHHHccccEEEEEccHHHHHHHHHccccEEEEEEcccccccEEccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccEEEEEEccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHcccHHHcHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHccHHHccc //