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Lactobacillus salivarius UCC118 (lsal0)
Gene : ABD99037.1
DDBJ      :             Transcriptional regulator, TetR family
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  50/915 : Eukaryota  1/199 : Viruses  0/175   --->[See Alignment]
a.121.1a.4.1
:215 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   31->62 2raeA PDBj 1e-05 46.9 %
:RPS:PDB   23->214 3bhqA PDBj 2e-13 14.6 %
:RPS:SCOP  24->62 1z77A1  a.4.1.9 * 6e-08 35.9 %
:RPS:SCOP  97->214 1t56A2  a.121.1.1 * 2e-07 13.8 %
:HMM:SCOP  17->87 1ui5A1 a.4.1.9 * 5.1e-11 31.0 %
:RPS:PFM   29->62 PF00440 * TetR_N 3e-05 41.2 %
:HMM:PFM   32->72 PF00440 * TetR_N 8.4e-17 43.9 41/47  
:BLT:SWISS 15->199 SLMA_VIBCH 1e-05 21.5 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID ABD99037.1 GT:GENE ABD99037.1 GT:PRODUCT Transcriptional regulator, TetR family GT:DATABASE GIB00337CH01 GT:ORG lsal0 GB:ACCESSION GIB00337CH01 GB:LOCATION 275988..276635 GB:FROM 275988 GB:TO 276635 GB:DIRECTION + GB:PRODUCT Transcriptional regulator, TetR family GB:NOTE COG0583 [K] Transcriptional regulator GB:PROTEIN_ID ABD99037.1 GB:DB_XREF GI:90820398 LENGTH 215 SQ:AASEQ MENKTILEDYEEILGNKKLTNGQEKALLSVINLFAKQGYDATSTAQIAKNAGISEATIFKYYSTKEKLLLEIINLITTELFPKFQRKFFSEVNEVSDKSLKEIVTFIVINRFEFMKKNHQILRIFIQESLTKIKIRQMVSEGFVEAIKSNQEIFTEFRKLVGSKHPDYDAIVLVRIITGPMIAYFLQRFIFAPNAPCDEKRDLDLIITQILSGLE GT:EXON 1|1-215:0| BL:SWS:NREP 1 BL:SWS:REP 15->199|SLMA_VIBCH|1e-05|21.5|177/196| SEG 64->80|tkekllleiinlittel| BL:PDB:NREP 1 BL:PDB:REP 31->62|2raeA|1e-05|46.9|32/193| RP:PDB:NREP 1 RP:PDB:REP 23->214|3bhqA|2e-13|14.6|185/194| RP:PFM:NREP 1 RP:PFM:REP 29->62|PF00440|3e-05|41.2|34/47|TetR_N| HM:PFM:NREP 1 HM:PFM:REP 32->72|PF00440|8.4e-17|43.9|41/47|TetR_N| GO:PFM:NREP 2 GO:PFM GO:0003700|"GO:transcription factor activity"|PF00440|IPR001647| GO:PFM GO:0006355|"GO:regulation of transcription, DNA-dependent"|PF00440|IPR001647| RP:SCP:NREP 2 RP:SCP:REP 24->62|1z77A1|6e-08|35.9|39/75|a.4.1.9| RP:SCP:REP 97->214|1t56A2|2e-07|13.8|116/120|a.121.1.1| HM:SCP:REP 17->87|1ui5A1|5.1e-11|31.0|71/0|a.4.1.9|1/1|Homeodomain-like| OP:NHOMO 54 OP:NHOMOORG 51 OP:PATTERN -------------------------------------------------------------------- -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------11-11111121--11111------1-11-1----11111111-----------------1----1-22---------11-11--11--111----111----------------------------------1--1-----------------------------------1------1--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------11------------------------------------------------- -------------1----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 202 STR:RPRED 94.0 SQ:SECSTR #############ccHHHHcccHHHHHHHHHHHHHHHccTTccHHHHHHHHTccHHHHHHHHccHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHTcccHHHHHHHHHHHHHHHcHHHHHHHHHHHHTTTTHHHHHHHHHHTHHHHHHHHHHHHHHHHTHTTccccccHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHH DISOP:02AL 1-2,8-26| PSIPRED cccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHccccccHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHcc //