[GTOP] [HELP] [ORGANISMS] [SEARCH] [SUMMARY]
Lactobacillus salivarius UCC118 (lsal0)
Gene : ABD99187.1
DDBJ      :             Bacterial Peptide Chain Release Factor 3
Swiss-Prot:RF3_LACS1    RecName: Full=Peptide chain release factor 3;         Short=RF-3;

Homologs  Archaea  67/68 : Bacteria  912/915 : Eukaryota  197/199 : Viruses  0/175   --->[See Alignment]
b.43.3c.37.1d.58.11
:525 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   8->520 2h5eA PDBj e-112 48.9 %
:RPS:PDB   12->516 2dy1A PDBj 3e-56 21.7 %
:RPS:SCOP  4->276 1darA2  c.37.1.8 * 4e-58 32.5 %
:RPS:SCOP  256->391 1n0uA1  b.43.3.1 * 2e-14 15.3 %
:RPS:SCOP  396->466 1fnmA4  d.58.11.1 * 2e-15 18.3 %
:HMM:SCOP  8->277 2bv3A2 c.37.1.8 * 8.2e-85 39.8 %
:HMM:SCOP  260->393 2bv3A1 b.43.3.1 * 1.6e-28 32.2 %
:HMM:SCOP  393->466 2bv3A4 d.58.11.1 * 4.8e-16 31.1 %
:RPS:PFM   14->146 PF00009 * GTP_EFTU 2e-25 39.8 %
:HMM:PFM   12->276 PF00009 * GTP_EFTU 1.6e-50 37.2 180/189  
:HMM:PFM   314->380 PF03144 * GTP_EFTU_D2 4.9e-11 28.4 67/74  
:BLT:SWISS 1->525 RF3_LACS1 0.0 100.0 %
:PROS 58->73|PS00301|EFACTOR_GTP

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID ABD99187.1 GT:GENE ABD99187.1 GT:PRODUCT Bacterial Peptide Chain Release Factor 3 GT:DATABASE GIB00337CH01 GT:ORG lsal0 GB:ACCESSION GIB00337CH01 GB:LOCATION 405426..407003 GB:FROM 405426 GB:TO 407003 GB:DIRECTION + GB:PRODUCT Bacterial Peptide Chain Release Factor 3 GB:NOTE COG4108 [J] Peptide chain release factor RF-3 GB:PROTEIN_ID ABD99187.1 GB:DB_XREF GI:90820548 LENGTH 525 SQ:AASEQ MDKKQLEESVNNRRTFAIISHPDAGKTTITEQLLLFGGVVRKAGTVKAKKSGNFAKSDWMEIEKKRGISVTSSVMQFDYAGKRVNILDTPGHEDFSEDTYRTLMAVDSAVMVIDSAKGIEPQTKKLFQVCRMRGIPIFTFINKLDRDGREPLDLTAELEDVLGIESYAMNWPIGMGKGLKGLYDIYNHRIELYRSEDEGQAFLELDDNGEIKGDNPLKDESIYKQVLEEIELIEGAGSEFDEEKIAKGELTPVFFGSALTNFGVKTFLDAYLKYAPKPAAHKTEDGSEVEPDRKDFSGFIFKIQANMNPNHRDRIAFVRICSGEFDRGMDVFLERTGKKLRLSNSTQFMADTRETLETAVAGDIIGLYDTGNFQIGDSIYTGKKAVKFEKLPQFTPELFMRVTAKNVMKQKSFHKGIQQLVQEGAVQLYQSYSTGDYILGAVGQLQFEVFQFRMANEYNSEVVMTPMGHKIARWIDPEQLDEKMSSSRNLLVKDRAGMPLFLFENEFAERWFMDKYPDVKLTAKL GT:EXON 1|1-525:0| SW:ID RF3_LACS1 SW:DE RecName: Full=Peptide chain release factor 3; Short=RF-3; SW:GN Name=prfC; OrderedLocusNames=LSL_0374; SW:KW Complete proteome; Cytoplasm; GTP-binding; Nucleotide-binding;Protein biosynthesis. SW:EXACT T SW:FUNC + BL:SWS:NREP 1 BL:SWS:REP 1->525|RF3_LACS1|0.0|100.0|525/525| GO:SWS:NREP 4 GO:SWS GO:0005737|"GO:cytoplasm"|Cytoplasm| GO:SWS GO:0005525|"GO:GTP binding"|GTP-binding| GO:SWS GO:0000166|"GO:nucleotide binding"|Nucleotide-binding| GO:SWS GO:0006412|"GO:translation"|Protein biosynthesis| PROS 58->73|PS00301|EFACTOR_GTP|PDOC00273| BL:PDB:NREP 1 BL:PDB:REP 8->520|2h5eA|e-112|48.9|468/488| RP:PDB:NREP 1 RP:PDB:REP 12->516|2dy1A|3e-56|21.7|484/660| RP:PFM:NREP 1 RP:PFM:REP 14->146|PF00009|2e-25|39.8|128/183|GTP_EFTU| HM:PFM:NREP 2 HM:PFM:REP 12->276|PF00009|1.6e-50|37.2|180/189|GTP_EFTU| HM:PFM:REP 314->380|PF03144|4.9e-11|28.4|67/74|GTP_EFTU_D2| GO:PFM:NREP 2 GO:PFM GO:0003924|"GO:GTPase activity"|PF00009|IPR000795| GO:PFM GO:0005525|"GO:GTP binding"|PF00009|IPR000795| RP:SCP:NREP 3 RP:SCP:REP 4->276|1darA2|4e-58|32.5|240/254|c.37.1.8| RP:SCP:REP 256->391|1n0uA1|2e-14|15.3|124/138|b.43.3.1| RP:SCP:REP 396->466|1fnmA4|2e-15|18.3|71/79|d.58.11.1| HM:SCP:REP 8->277|2bv3A2|8.2e-85|39.8|266/0|c.37.1.8|1/1|P-loop containing nucleoside triphosphate hydrolases| HM:SCP:REP 260->393|2bv3A1|1.6e-28|32.2|121/0|b.43.3.1|1/1|Translation proteins| HM:SCP:REP 393->466|2bv3A4|4.8e-16|31.1|74/0|d.58.11.1|1/1|EF-G C-terminal domain-like|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a8188C433283584544126239374596FS4A855668O6586799B*98889KEKN6FDBDD8887 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 524 STR:RPRED 99.8 SQ:SECSTR cTHHHHTTcGGcEEEEEEEEcTTccHHHHHHHHHHHTTcccccccGGGTccHHcccccccHHHHHTTcccccEEEEEEETTEEEEEEEccccGGGHHHHHHHHHHccEEEEEEETTTcccHHHHHHHHHHHHTTccEEEEEEcGGGcccHHHHHHHHHHHHHHccEEEcEEEEEETTEEEEEEETTTTEEEEEETTEEEEEcccGGGHHHHHHHHHHHcHHHHHHHHHTccccHHHHHHHHHHHHHTTccEEEEEccTTTTccHHHHHHHHHHHcccHHHHHccHHHHHHHTTcccEEEEEEEEEETcccTTEEEEEEEEEEcEEcTTEEEccTTccEEEccccEEEEETTEEEEEccEETTcEEEEcccTTccTTcEEEccccccGGGccccccccEEEEEEEccHHHHHHHHHHHHHHHHHcTTcEEEcTTTccEEEEEccHHHHHHHHHHHHHHTTccEEEEccccccEEEEcccEEEEEEEEEEEEEEEEEEEccccEEEEcccTTcccGGGHHHHHHcc# DISOP:02AL 1-8,483-484| PSIPRED ccHHHHHHHHHcEEEEEEEccccccHHHHHHHHHHHHcHHHHccEEccccccccEEcccHHHHHHHcccEEEEEEEEEEccEEEEEEccccccHHHHHHHHHHHHHcEEEEEEEccccccHHHHHHHHHHHHccccEEEEEEccccccccHHHHHHHHHHHHcccHHHEEcccEEcccHHHHHHHHHHccccccccccccEEEEcccccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHcccccccHHHHHHHHHccHHHHHHHHHHccccccccccccccccccccccccEEEEEEEccccccccEEEEEEEEEEEEccccEEEEEccccEEEEEEEEEEEcccEEEccccccccEEEEEcccccEEEEEEEccccccccccccccccEEEEEEEEccHHHHHHHHHHHHHHHHcccEEEEEcccccEEEEEEccHHHHHHHHHHHHHHHccEEEEEccEEEEEEEccHHHHHHHccccccEEEEEEcccEEEEcccHHHHHHHHHHcccEEEEEcc //