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Lactobacillus salivarius UCC118 (lsal0)
Gene : ABD99423.1
DDBJ      :             Primosomal protein n-prim
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  852/915 : Eukaryota  4/199 : Viruses  0/175   --->[See Alignment]
b.40.4c.119.1c.37.1d.260.1f.6.1
:792 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   5->80 2d7hD PDBj 4e-06 33.3 %
:BLT:PDB   255->382 1gm5A PDBj 2e-09 32.0 %
:BLT:PDB   551->658 1t5lA PDBj 2e-07 35.0 %
:RPS:PDB   5->98 2d7eA PDBj 2e-27 30.8 %
:RPS:PDB   236->728 1br2A PDBj 1e-62 12.4 %
:RPS:SCOP  1->117 1m1lA  d.260.1.1 * 9e-04 12.4 %
:RPS:SCOP  223->432 2eyqA3  c.37.1.19 * 9e-47 24.7 %
:RPS:SCOP  453->496 1un8A4  c.119.1.2 * 7e-05 13.6 %
:RPS:SCOP  489->616 2gnrA1  b.40.4.15 * 7e-40 11.0 %
:RPS:SCOP  587->669 1gm5A4  c.37.1.19 * 4e-04 21.7 %
:RPS:SCOP  701->754 1lkfA  f.6.1.1 * 7e-04 11.1 %
:HMM:SCOP  61->439 1gm5A3 c.37.1.19 * 2.8e-45 28.0 %
:HMM:SCOP  267->669 2bmfA2 c.37.1.14 * 5e-40 24.0 %
:RPS:PFM   568->650 PF00271 * Helicase_C 5e-04 33.3 %
:HMM:PFM   276->419 PF00270 * DEAD 6.9e-16 23.1 130/167  
:HMM:PFM   577->650 PF00271 * Helicase_C 5.1e-11 32.3 62/78  
:HMM:PFM   505->543 PF07191 * DUF1407 3.3e-05 27.0 37/70  
:BLT:SWISS 4->788 PRIA_BACSU 0.0 51.5 %

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID ABD99423.1 GT:GENE ABD99423.1 GT:PRODUCT Primosomal protein n-prim GT:DATABASE GIB00337CH01 GT:ORG lsal0 GB:ACCESSION GIB00337CH01 GB:LOCATION 653814..656192 GB:FROM 653814 GB:TO 656192 GB:DIRECTION + GB:PRODUCT Primosomal protein n-prim GB:PROTEIN_ID ABD99423.1 GB:DB_XREF GI:90820784 LENGTH 792 SQ:AASEQ MQTNKPFTYKIPENLQGQLERGMRVVVPFGKGNRLIQGFIINFKSSSENIDNIKEIDSVLDLEPVLNEEMLEIADWLSKYTFSFKIRCLQVMLPSIMKAKYERKFTYIGEQDEKVKELFSGKSDLLGSDKKVNSSTINKLLQLRKQGKIKVDYIVKNKAKAKLVSVIKTKLSLQEYENELGSIAPNASKQKKLLNTLKEFPVGSKIRQSELREKYNFTNADIKNASEKGWIDVIKVEKYRDPFANYKSYYEKKHKLTQEQSKVVKKLDDDIENDKARVSLLQGVTGSGKTEVYLQVIDTALNQGKAAIVLVPEISLTPQMVKRFRARFGTKVAVLHSGLSIGEKYDEWRRIEREEAQVVVGARSAIFAPLKNLGVIIVDEEHESSYKQDEMPRYNAKDVAKWRGIYHSCPVIFGSATPSLESRARAQKGVYDWLRLTKRVNNQKLPKVQIIDMREAVKTSPIPDFSLKMVNSIQEKLDKKEQIVLLLNRRGYSTFMMCRECGYVIKCPNCDISLTVHLDSRSLKCHYCGYETRIPYECPSCSSKKIRYYGTGTQKIEKELKGLFPQARILRMDVDTTRKKGAHEKLLRTFGDGKADILLGTQMIAKGLDFPNVTFVGVLNADTSLGISDFRASERTFQLLTQVSGRAGRADKDGEVIIQTFNPDHYAIKLAQNHDYENFFYKEMELRHNLNYPPYYYTLKITVSSNSESLTARTIFKINNEVRMNVSKGTIILGPTPQTVTKINNRYYYQIVIKYKKETKLINYLQDLLLSSQRIEREGIQIVIDREPLKFN GT:EXON 1|1-792:0| BL:SWS:NREP 1 BL:SWS:REP 4->788|PRIA_BACSU|0.0|51.5|781/805| BL:PDB:NREP 3 BL:PDB:REP 5->80|2d7hD|4e-06|33.3|72/102| BL:PDB:REP 255->382|1gm5A|2e-09|32.0|128/729| BL:PDB:REP 551->658|1t5lA|2e-07|35.0|100/595| RP:PDB:NREP 2 RP:PDB:REP 5->98|2d7eA|2e-27|30.8|91/105| RP:PDB:REP 236->728|1br2A|1e-62|12.4|490/673| RP:PFM:NREP 1 RP:PFM:REP 568->650|PF00271|5e-04|33.3|69/76|Helicase_C| HM:PFM:NREP 3 HM:PFM:REP 276->419|PF00270|6.9e-16|23.1|130/167|DEAD| HM:PFM:REP 577->650|PF00271|5.1e-11|32.3|62/78|Helicase_C| HM:PFM:REP 505->543|PF07191|3.3e-05|27.0|37/70|DUF1407| GO:PFM:NREP 3 GO:PFM GO:0003676|"GO:nucleic acid binding"|PF00271|IPR001650| GO:PFM GO:0004386|"GO:helicase activity"|PF00271|IPR001650| GO:PFM GO:0005524|"GO:ATP binding"|PF00271|IPR001650| RP:SCP:NREP 6 RP:SCP:REP 1->117|1m1lA|9e-04|12.4|113/236|d.260.1.1| RP:SCP:REP 223->432|2eyqA3|9e-47|24.7|194/233|c.37.1.19| RP:SCP:REP 453->496|1un8A4|7e-05|13.6|44/335|c.119.1.2| RP:SCP:REP 489->616|2gnrA1|7e-40|11.0|127/137|b.40.4.15| RP:SCP:REP 587->669|1gm5A4|4e-04|21.7|72/191|c.37.1.19| RP:SCP:REP 701->754|1lkfA|7e-04|11.1|54/292|f.6.1.1| HM:SCP:REP 61->439|1gm5A3|2.8e-45|28.0|257/264|c.37.1.19|1/2|P-loop containing nucleoside triphosphate hydrolases| HM:SCP:REP 267->669|2bmfA2|5e-40|24.0|287/0|c.37.1.14|1/1|P-loop containing nucleoside triphosphate hydrolases| OP:NHOMO 1161 OP:NHOMOORG 856 OP:PATTERN -------------------------------------------------------------------- 111-12112221221-111-1111111-11111111-111-----11-1--1-1---111-1-1-----1--111---1111-2121-111111112--1111111221111111111111111111211111111122222222132122222222111112222222212112222122222111112211111111111111111122221111111123111111112222222222222222221112121222222231111111221112222222222222333323222232222222222222333333333111211111111121221111111211121112211112212221111131212111111111211111111111122232222222-11111111111112221111111111111111111111111111111111111111121111111111111111111111111111111111111111111111111111111111111111122111111111111111111122111111111222221112111111111111111111111111111112222122222222222222222222112222212222122222222222222222221-111211--22211111111111111111-1111111111111111111111111111111111111111111111111111-111111111111--11111112121121221111112111-112111111111112122221222211112111111111111222222222222311111111111111111112111111222121111121111---------------------2223333223211 -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1--2-1---1---- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 678 STR:RPRED 85.6 SQ:SECSTR ###cccccccccTTcc##ccTTcEEEEEETTTEEEEEEEccccccccccGGGcccccEEccccccccHHHHHHHHHHHHHTTccHHHHHHHHHHHHHc#####################################################################################HHHHHHHHHHHHHHHHHHHHHHTTTTTccHHHHHHHHHHHTTccccHHHccccTTccHHHHHHTTTccGGGccccHHHHHHHHHHHHHHHTccEEEEEEccTTccHHHHHHHHHHHHHHHHTTHHHHHHHHHEEcccccTTEEccEEEEEEcTTccEEEEEEEEEcccGGGGTcccTTccccHHHHHHHHHcTTcccTTTcTTcTTcccccccccHHHHHHHHHHHHHHHTccHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHTccHHHHHHHHHccccccHHHHHHHHHHHHHHHccEEEEEEcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTccccccccccccHHHHHHHHcccccccHHHHHHHHcccHHHHHHHHHHHTTTTEEEEEEcTTHHHHHHccccHHHHHHHHTcccHHHHHHTcccHHHHHHHHHHHTcEEEEEEEEcccccccTTcccHHHHHcHHHHHTTHHHHHHHHHHcccEEEEHHHHHHTHHHGGGGTTccccccccHHHHHHHcGGGTcccccEEEccHHHHHHHHHcccHHHHHHHHHHHHH######################## DISOP:02AL 1-1,577-577,579-580,792-793| PSIPRED ccccccEEEccccccccccccccEEEEcccccccEEEEEEEEEccccccHHHcccHHHHccccccccHHHHHHHHHHHHHccccHHHHHHHcccHHccccccccEEccccccHHHHHHHcccccccccccccHHHHHHHHHHHHHcccEEEEccccccccHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHccccccccHHHHHHHccccHHHHHHHHHcccccHHHHccccccccccccHHcccccccHHHHHHHHHHHHHHHccccccEEEEccccccHHHHHHHHHHHHHHccccEEEEEccHHHHHHHHHHHHHHcccEEEEEEccccHHHHHHHHHHHHcccccEEEEcHHHHHHHHHHccEEEEEccccccccccccccHHHHHHHHHHHccccccEEEEEccccHHHHHHHHccccEEEEccccccccccccEEEEEcHHHHHHcccccccHHHHHHHHHHHHccccEEEEEcccccEEEEEEccccccccccccccHHHHcccccEEEEcccccccccccccccccccHHHHHHHHHHHHHHHHHHHcccccEEEEEccccccHHHHHHHHHHHHcccccEEEEHHHHHcccccccccEEEEEccccccccHHHHHHHHHHHHHHHHHHHHcccccccEEEEEEccccHHHHHHHHHccHHHHHHHHHHHHHHcccccccEEEEEEEEcccHHHHHHHHHHHHHHHHHcccccEEEEccccccHHHHcccEEEEEEEEcccHHHHHHHHHHHHHHHHHccccccEEEEEEcccccc //