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Lactobacillus salivarius UCC118 (lsal0)
Gene : ABD99425.1
DDBJ      :             16S rRNA m(5)C 967 methyltransferase
Swiss-Prot:             

Homologs  Archaea  51/68 : Bacteria  754/915 : Eukaryota  197/199 : Viruses  0/175   --->[See Alignment]
a.79.1c.66.1
:445 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   39->123 3d3cA PDBj 6e-06 31.8 %
:BLT:PDB   139->444 2yxlA PDBj 4e-44 35.9 %
:RPS:PDB   61->444 2as0A PDBj 3e-31 14.6 %
:RPS:SCOP  4->130 1tztA  a.79.1.1 * 5e-24 21.3 %
:RPS:SCOP  151->444 1ixkA  c.66.1.38 * 1e-65 28.5 %
:HMM:SCOP  4->154 1sqgA1 a.79.1.3 * 5.5e-33 33.8 %
:HMM:SCOP  137->445 1ixkA_ c.66.1.38 * 4.4e-68 34.0 %
:RPS:PFM   7->126 PF01029 * NusB 6e-09 31.6 %
:RPS:PFM   215->442 PF01189 * Nol1_Nop2_Fmu 4e-41 42.9 %
:HMM:PFM   171->443 PF01189 * Nol1_Nop2_Fmu 2.2e-56 35.4 271/283  
:HMM:PFM   5->127 PF01029 * NusB 8.1e-30 32.5 123/134  
:BLT:SWISS 1->445 RSMB_BACSU e-111 47.0 %
:PROS 325->336|PS01153|NOL1_NOP2_SUN

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID ABD99425.1 GT:GENE ABD99425.1 GT:PRODUCT 16S rRNA m(5)C 967 methyltransferase GT:DATABASE GIB00337CH01 GT:ORG lsal0 GB:ACCESSION GIB00337CH01 GB:LOCATION 657156..658493 GB:FROM 657156 GB:TO 658493 GB:DIRECTION + GB:PRODUCT 16S rRNA m(5)C 967 methyltransferase GB:NOTE COG0144 [J] tRNA and rRNA cytosine-C5-methylases GB:PROTEIN_ID ABD99425.1 GB:DB_XREF GI:90820786 LENGTH 445 SQ:AASEQ MKNKTVRLLAVELLTRVESQGTYSNLALNKVIEENNFSVKDTKLLTTIVYGVIQHKLTLEYWLEPFIKKANKLQLWVKELLLVSLYQMVYLDKIPDRAVFNESIEIAKIKGHTGIRKFVTGVLHSIRRNGLREVNEIDNDITRLSIGTSTPEWLVEELIKELGITKVESILDTINTSPKHSVRINTHKVNKQILVNELKNDGYTIRESEVTPDALIVDGGFLPKSSEFRNGKMIIQDESAMLAVESMDIQKDDIVLDACAAPGGKTTQIAEKLMKGEGKVWALDIHKHKVKLIEENANKLGLISKVSAKQLDARKAITEFDSEKFDKILVDAPCSGLGLMRRKPEVKYEKKLADSYSLHDIQVNILEKVAPLLKKGGYLTYSTCTILNIENQKVIDDFLKKHPEFVQEKTYTKNKLKDERDTLSLTIYPDDYMSDGFFIATLRKK GT:EXON 1|1-445:0| BL:SWS:NREP 1 BL:SWS:REP 1->445|RSMB_BACSU|e-111|47.0|443/447| PROS 325->336|PS01153|NOL1_NOP2_SUN|PDOC00888| BL:PDB:NREP 2 BL:PDB:REP 39->123|3d3cA|6e-06|31.8|85/138| BL:PDB:REP 139->444|2yxlA|4e-44|35.9|298/443| RP:PDB:NREP 1 RP:PDB:REP 61->444|2as0A|3e-31|14.6|350/382| RP:PFM:NREP 2 RP:PFM:REP 7->126|PF01029|6e-09|31.6|117/124|NusB| RP:PFM:REP 215->442|PF01189|4e-41|42.9|219/229|Nol1_Nop2_Fmu| HM:PFM:NREP 2 HM:PFM:REP 171->443|PF01189|2.2e-56|35.4|271/283|Nol1_Nop2_Fmu| HM:PFM:REP 5->127|PF01029|8.1e-30|32.5|123/134|NusB| GO:PFM:NREP 2 GO:PFM GO:0003723|"GO:RNA binding"|PF01029|IPR006027| GO:PFM GO:0006355|"GO:regulation of transcription, DNA-dependent"|PF01029|IPR006027| RP:SCP:NREP 2 RP:SCP:REP 4->130|1tztA|5e-24|21.3|127/141|a.79.1.1| RP:SCP:REP 151->444|1ixkA|1e-65|28.5|281/305|c.66.1.38| HM:SCP:REP 4->154|1sqgA1|5.5e-33|33.8|139/140|a.79.1.3|1/1|NusB-like| HM:SCP:REP 137->445|1ixkA_|4.4e-68|34.0|303/0|c.66.1.38|1/1|S-adenosyl-L-methionine-dependent methyltransferases| OP:NHOMO 2093 OP:NHOMOORG 1002 OP:PATTERN 33224644222222342222122311111111---11111111-----1----95555554---12-- 111--11111111111111-11--111111111111-1-11-----11111-1----1--1111-111111-------1-11------1111-111---111111221111111111-111111111111111121--------1-11121111111111111111-11111111111111111112211-22222222222222222211111222122211112222222311111111111111111111122222221222222221222211112222222222222222222222222222222222222222222121111111111111122111111212112221111121111212222-11111222222222222222222222222222122222-2212222222222222222222223322222212222222222222211211222------------------------------222222222222222222222222222222222222222222222222222222222222222222222222222221111212212111211111211112324-11---1-1111-1-----------11-11332111111224544444444444444444--11221------22221222222222222-2222222222222222222222221112222222222222222222221221-111111111111--12111111111111111111-11111-1111111111111112111111111111111111111-11-1122222222222233111111111111111-2---------------1------1---1--------1----------111-111-31 3344444173521352221122211122222121112222222221112222221122222233322313343322233233333344-3332212222221244334B4B5544B53444554864A4Cg8-76E3241634543525244274656544A45533624C25544244X7652235852854764442 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 445 STR:RPRED 100.0 SQ:SECSTR ccccccccHHHHHHHHTTTTcccccHHHHHHHHcccccccccTHHHHHHHHTcccHHHHHcEEEGccTTccEEEEEETTccEEEEEEEcTTccEEEEEEccTTccccHHHHHHHHHHHHHHHHHTcccccEEEEEGGGGTcTTEEEEEEETTEEEEEEccHcHHTTHHHHHHHHHHcTTccEEEEEEccHHHHHTTcccEEEEEEEccccEEEEEETTEEEEEEEEEcccccccccTTHHHHHHHGGGccTTcEEEETTcTTTHHHHHHHHHHHTTccEEEEEEccHHHHHHHHHHHHHTTcGGGEEEEccHHHHHHHHHTTccEEEEEEccccccccGGGHHHTTcccccccccccHHHHHHHHHHHHHTTEEEEEEEEEEEccTTccHHHHHHTEEEEccccccccTTccccccccEEEEEcccTcGGGcccEEEEEEEEEcc DISOP:02AL 1-2| PSIPRED ccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHcccHHHHHHHHHHccHHHHHHHHHHHcccccEEEEEccccccHHHHHHHHHHcccEEccccccccEEEEccccccccHHHHccEEEEEcHHHHHHHHHcccccccEEEEEcccccHHHHHHHHHHHcccEEEEEEEccHHHHHHHHHHHHHcccccEEEEEEccccccccccccccccEEEEcccccccccccccccHHHcccHHHHHHHHHHHHHHHHHHHHHcccccEEEEEEccccHHccHHHHHHHHHHccccEEEcccccccccccccccEEEEccccccccEEEEEEEEEc //