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Lactobacillus salivarius UCC118 (lsal0)
Gene : ABD99562.1
DDBJ      :             Phage helicase
Swiss-Prot:             

Homologs  Archaea  3/68 : Bacteria  247/915 : Eukaryota  139/199 : Viruses  3/175   --->[See Alignment]
c.37.1
:407 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   1->404 1z6aA PDBj 1e-16 26.2 %
:RPS:PDB   9->396 1c4oA PDBj 2e-11 12.8 %
:RPS:SCOP  7->157 1z63A1  c.37.1.19 * 1e-10 24.8 %
:RPS:SCOP  264->402 1z3iX1  c.37.1.19 * 3e-12 24.5 %
:HMM:SCOP  9->162 2fwrA2 c.37.1.19 * 2.8e-09 21.0 %
:HMM:SCOP  93->404 1z5zA1 c.37.1.19 * 1.1e-26 21.8 %
:RPS:PFM   9->254 PF00176 * SNF2_N 7e-09 28.1 %
:HMM:PFM   9->240 PF00176 * SNF2_N 3.5e-17 27.0 230/297  
:HMM:PFM   321->367 PF00271 * Helicase_C 3.1e-08 23.9 46/78  
:HMM:PFM   243->317 PF06401 * Alpha-2-MRAP_C 0.0009 21.3 75/205  
:BLT:SWISS 9->387 SMCA1_MOUSE 9e-20 28.7 %

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID ABD99562.1 GT:GENE ABD99562.1 GT:PRODUCT Phage helicase GT:DATABASE GIB00337CH01 GT:ORG lsal0 GB:ACCESSION GIB00337CH01 GB:LOCATION 788674..789897 GB:FROM 788674 GB:TO 789897 GB:DIRECTION + GB:PRODUCT Phage helicase GB:NOTE COG0553 [KL] Superfamily II DNA/RNA helicases, SNF2 family GB:PROTEIN_ID ABD99562.1 GB:DB_XREF GI:90820923 LENGTH 407 SQ:AASEQ MNKVAYYLDMGLGKTFVGSEKLHQLNKRANLLICQKSLIPMWINHFKTYYKYQVFDGTKSTQLNQVLNSYEKLRPFVLIINYDLVFRRDLKSVFRHDFTLMLDESSMIQNEKTKRTKYILKMHPDNIILLSGTPTSGKYERLWSQAHLLGWNITKSKYNKIYVNWDTMYLGIQKFKVVNKDHPYKNVQRLKRKLREHGAVFMKTEDVFELPEQNFIPIKVKQSSNYRKFLKDKYLEFDNQELLGDTALTYLLGLRQLSGMYSKEKLDRLSDLIDSTEDRLIIFYNFERELDEIVKIAKNKIRPISIVNGKTKNLTNYETKDNSITLIQYQAGSMGLNLQKANKIVYFTPPQQSELYEQSKKRIHRIGQERSCFYYNLIVEKSVEERIYRALKERRDYTDELFKSDFD GT:EXON 1|1-407:0| BL:SWS:NREP 1 BL:SWS:REP 9->387|SMCA1_MOUSE|9e-20|28.7|366/1046| BL:PDB:NREP 1 BL:PDB:REP 1->404|1z6aA|1e-16|26.2|378/480| RP:PDB:NREP 1 RP:PDB:REP 9->396|1c4oA|2e-11|12.8|383/504| RP:PFM:NREP 1 RP:PFM:REP 9->254|PF00176|7e-09|28.1|228/265|SNF2_N| HM:PFM:NREP 3 HM:PFM:REP 9->240|PF00176|3.5e-17|27.0|230/297|SNF2_N| HM:PFM:REP 321->367|PF00271|3.1e-08|23.9|46/78|Helicase_C| HM:PFM:REP 243->317|PF06401|0.0009|21.3|75/205|Alpha-2-MRAP_C| GO:PFM:NREP 2 GO:PFM GO:0003677|"GO:DNA binding"|PF00176|IPR000330| GO:PFM GO:0005524|"GO:ATP binding"|PF00176|IPR000330| RP:SCP:NREP 2 RP:SCP:REP 7->157|1z63A1|1e-10|24.8|145/230|c.37.1.19| RP:SCP:REP 264->402|1z3iX1|3e-12|24.5|139/346|c.37.1.19| HM:SCP:REP 9->162|2fwrA2|2.8e-09|21.0|138/0|c.37.1.19|1/1|P-loop containing nucleoside triphosphate hydrolases| HM:SCP:REP 93->404|1z5zA1|1.1e-26|21.8|206/0|c.37.1.19|1/1|P-loop containing nucleoside triphosphate hydrolases| OP:NHOMO 605 OP:NHOMOORG 392 OP:PATTERN -----------------------------------------------1------------------11 -----------1-------------------------111--11--1------11------------1-----------112-----1--11--------11---313-2111111111111111-------1------11--22-3-11--2--11-----1---2132-----------1-1-1------312222233232223321-2221222212221-21113232---111--1111--1---1-2--1--1-1---------1------1-1---1-111-------------2231-1-11121--------12123322233232223111--221-2-----2-11221-1---11-1-21--3--------------1---------------------1--------------------------------------------------------------------------------1------------------------1--------11--2--------1---1---1--1--------------1---1-13-12111-111111-1----------111--------------------------11----1-1-111-111111-1111-1--111------------------------------------1--------------------------------------------------------------------2111--1---------------------------2-1111-11111111-111----------1-------------1--1-1-------------------------------------11--1---111--------1---------1 222143--4-2-111111-232112211111-14112111111111-1111122112--111122--1-232343-111123321114-1331222---1-1343411-41111-1----1-2-------4--2------1--------1-----21-1227112111118212-21-28121--1243-24211212- ------------------------------------------------------11--------------------------------------------------------1-------------------------------------------------------------- STR:NPRED 406 STR:RPRED 99.8 SQ:SECSTR HHHTTccEccEEEcTTccHHHHHHHTccEEEEEccHHHHHHHHHHHHHHcTTEGGGTEEEcccccccTTc#cHHcEEEEEEGGGccccccHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHHHHHHTTcTHcHHHHHHHHHHHHHHHHHHcccTTGGGGHHHHHTccHHHHHHHHHHHHHHHHHHHHHTTcccGGGGGcccccHHHHHcHTccEEEEEEccccHHHHHHccccEEEcccTTcccccEEEEEccTGTHHHHHHHHHHHHHcEEEEEcccHHHHHHHHHHHHHTTccEEEEcTTccHHHHHHHTTcccEEEEcccccTTcccTTEEEEEETTTTcccHHHHHHHGGGTTccEcEEEEEcccHccHHHHHHHHHHHHHHHHcHHHHHHHHHH DISOP:02AL 405-408| PSIPRED cccEEEEEcccccHHHHHHHHHHHHcccccEEEEEccHHHHHHHHHHHHccEEEEEcccHHHHHHHHHHHHcccccEEEEcHHHHHHHHHHHHcccccEEEEEcHHHcccccHHHHHHHHHcccccEEEEEcccccccHHHHHHHHHHHcccccHHHHHHHHHHHHcccccccccHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEEcHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHcccccccHHHHHHHHHHHHccccEEEEEcHHHHHHHHHHHHHHccccEEEEcccccHHHHHHcccccEEEEcccccccccccccccEEEEEcccccHHHHHHHHHHHHHccccccEEEEEEEEcccHHHHHHHHHHHHHHHHHHHHccccc //