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Lactobacillus salivarius UCC118 (lsal0)
Gene : ABD99607.1
DDBJ      :             Phage lysin
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  91/915 : Eukaryota  0/199 : Viruses  0/175   --->[See Alignment]
c.1.8
:252 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   44->238 2nw0A PDBj 9e-25 39.5 %
:RPS:SCOP  47->236 1jfxA  c.1.8.8 * 7e-22 22.4 %
:HMM:SCOP  38->241 1jfxA_ c.1.8.8 * 2.8e-35 29.9 %
:RPS:PFM   47->230 PF01183 * Glyco_hydro_25 2e-15 32.4 %
:HMM:PFM   47->231 PF01183 * Glyco_hydro_25 3.7e-26 27.1 177/181  
:BLT:SWISS 45->237 LYS_CLOAB 5e-13 32.0 %

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID ABD99607.1 GT:GENE ABD99607.1 GT:PRODUCT Phage lysin GT:DATABASE GIB00337CH01 GT:ORG lsal0 GB:ACCESSION GIB00337CH01 GB:LOCATION 820368..821126 GB:FROM 820368 GB:TO 821126 GB:DIRECTION + GB:PRODUCT Phage lysin GB:NOTE COG3757 [M] Lyzozyme M1 (1,4-beta-N-acetylmuramidase) GB:PROTEIN_ID ABD99607.1 GB:DB_XREF GI:90820968 LENGTH 252 SQ:AASEQ MNIWKWIEKLTQALQRLNSRIIVIENVLFDDKTNPDTPTPQHIGKIIDVSEWQGVIDWNKVIADDVTLSIIRVQHGSAHQDLKYMENLQQCISAGGKYAVYAYFAATSTSDAQQEARDFYNRTQKVVAGKQQPIFYAIDVESIEMSGDVTQMRAGVEAYMSQLNTLGVPDNKIVLYIANHLYDKFNLNVARPGAIWIPSYGQNDGTLANSLKPTHPYDLHQYTSKGSVNGITGNVDMSAEPSERFKELIFSA GT:EXON 1|1-252:0| BL:SWS:NREP 1 BL:SWS:REP 45->237|LYS_CLOAB|5e-13|32.0|175/324| BL:PDB:NREP 1 BL:PDB:REP 44->238|2nw0A|9e-25|39.5|172/189| RP:PFM:NREP 1 RP:PFM:REP 47->230|PF01183|2e-15|32.4|170/180|Glyco_hydro_25| HM:PFM:NREP 1 HM:PFM:REP 47->231|PF01183|3.7e-26|27.1|177/181|Glyco_hydro_25| GO:PFM:NREP 3 GO:PFM GO:0003796|"GO:lysozyme activity"|PF01183|IPR002053| GO:PFM GO:0009253|"GO:peptidoglycan catabolic process"|PF01183|IPR002053| GO:PFM GO:0016998|"GO:cell wall macromolecule catabolic process"|PF01183|IPR002053| RP:SCP:NREP 1 RP:SCP:REP 47->236|1jfxA|7e-22|22.4|183/217|c.1.8.8| HM:SCP:REP 38->241|1jfxA_|2.8e-35|29.9|194/0|c.1.8.8|1/1|(Trans)glycosidases| OP:NHOMO 127 OP:NHOMOORG 91 OP:PATTERN -------------------------------------------------------------------- -----------------------------------------------------------------------1222---12------------------------------------------------------------------------------------------------------------------222225112233341--11--112--------------1------------------11--2-----1---1---1-2----11111111111111222122212211111111111111111111111--11---------1---------------2-------------------------------------------------------1----------1------11---1-------------------------------------------------------------1------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 189 STR:RPRED 75.0 SQ:SECSTR ###########################################cEEEEEcGGGccccHHHHHHTTEEEEEEEEEEcTTcccccHHHHHHHHHHHTccEEEEEEcccccHHHHHHHHHHHHHHcccc##ccTTcccEEEEEccccccGGcccHHHHHHHHHHHHHHHTcHcccEEEEEcTTTTTTTTGGGccccEEEEEccc####cccccccccccccEEEEEEEEEETTTTEEEEEE############## DISOP:02AL 1-1| PSIPRED ccHHHHHHHHHHHHHHHcccEEEEEHHHcccccccccccccccccccEEccccccccHHHHHHccccEEEEEEEccccEEcccHHHHHHHHHHccccEEEEEEEEcccccHHHHHHHHHHHHHHHccccccccEEEEEEEEcccccccHHHHHHHHHHHHHHHHHHHHcccEEEEEccHHHHHHHccccccccccEEEccccccccccccccccccEEEEEEccccEEcccccccEEEEccccHHHHHHHcc //