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Lactobacillus salivarius UCC118 (lsal0)
Gene : ABD99744.1
DDBJ      :             Integrase/recombinase, XerD/RipX family
Swiss-Prot:             

Homologs  Archaea  47/68 : Bacteria  843/915 : Eukaryota  2/199 : Viruses  15/175   --->[See Alignment]
a.60.9d.163.1
:297 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   10->290 1a0pA PDBj 9e-51 41.4 %
:RPS:PDB   6->282 5crxA PDBj 3e-46 13.4 %
:RPS:SCOP  9->110 1crxA1  a.60.9.1 * 2e-18 10.9 %
:RPS:SCOP  113->297 1aihA  d.163.1.1 * 2e-37 27.2 %
:HMM:SCOP  2->100 1a0pA1 a.60.9.1 * 4.4e-18 29.6 %
:HMM:SCOP  106->295 4crxA2 d.163.1.1 * 2e-61 46.0 %
:RPS:PFM   7->86 PF02899 * Phage_integr_N 7e-10 32.5 %
:RPS:PFM   117->285 PF00589 * Phage_integrase 3e-38 50.9 %
:HMM:PFM   112->284 PF00589 * Phage_integrase 2e-54 45.2 168/173  
:HMM:PFM   9->90 PF02899 * Phage_integr_N 1.4e-20 35.4 82/84  
:BLT:SWISS 3->296 XERD_LACCA 1e-92 53.1 %

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID ABD99744.1 GT:GENE ABD99744.1 GT:PRODUCT Integrase/recombinase, XerD/RipX family GT:DATABASE GIB00337CH01 GT:ORG lsal0 GB:ACCESSION GIB00337CH01 GB:LOCATION complement(964160..965053) GB:FROM 964160 GB:TO 965053 GB:DIRECTION - GB:PRODUCT Integrase/recombinase, XerD/RipX family GB:NOTE COG4974 [L] Site-specific recombinase XerD GB:PROTEIN_ID ABD99744.1 GB:DB_XREF GI:90821105 LENGTH 297 SQ:AASEQ MAINNILMDYLHYLKVERGLSENTINSYGIDFKLFLEYLRENEIPSFKQVNKEVIVNYMQSEKNNNKANSSILRSVSSLRKFFQYLAQEKIIEKDPMLLIDTPKKKQHLPQVLTKEEVEKLLRSPNTGQVLGLRDRAMLELMYATGLRISEIINLKLEDLHLTMGTLQTLGKGHKERIVPVGDEAIKWVNRYLEEARPKLLKQKRSNYLFLNFHGNNLTRQGVWKNLKAEVRKAGIQKNITPHTLRHSFATHILENGADLRIVQELLGHADISTTQIYTHLSNKQLADIYNRAHPRA GT:EXON 1|1-297:0| BL:SWS:NREP 1 BL:SWS:REP 3->296|XERD_LACCA|1e-92|53.1|292/293| BL:PDB:NREP 1 BL:PDB:REP 10->290|1a0pA|9e-51|41.4|261/271| RP:PDB:NREP 1 RP:PDB:REP 6->282|5crxA|3e-46|13.4|276/297| RP:PFM:NREP 2 RP:PFM:REP 7->86|PF02899|7e-10|32.5|80/84|Phage_integr_N| RP:PFM:REP 117->285|PF00589|3e-38|50.9|161/168|Phage_integrase| HM:PFM:NREP 2 HM:PFM:REP 112->284|PF00589|2e-54|45.2|168/173|Phage_integrase| HM:PFM:REP 9->90|PF02899|1.4e-20|35.4|82/84|Phage_integr_N| GO:PFM:NREP 5 GO:PFM GO:0003677|"GO:DNA binding"|PF02899|IPR004107| GO:PFM GO:0015074|"GO:DNA integration"|PF02899|IPR004107| GO:PFM GO:0003677|"GO:DNA binding"|PF00589|IPR002104| GO:PFM GO:0006310|"GO:DNA recombination"|PF00589|IPR002104| GO:PFM GO:0015074|"GO:DNA integration"|PF00589|IPR002104| RP:SCP:NREP 2 RP:SCP:REP 9->110|1crxA1|2e-18|10.9|101/110|a.60.9.1| RP:SCP:REP 113->297|1aihA|2e-37|27.2|158/170|d.163.1.1| HM:SCP:REP 2->100|1a0pA1|4.4e-18|29.6|98/0|a.60.9.1|1/1|lambda integrase-like, N-terminal domain| HM:SCP:REP 106->295|4crxA2|2e-61|46.0|187/212|d.163.1.1|1/1|DNA breaking-rejoining enzymes| OP:NHOMO 3046 OP:NHOMOORG 907 OP:PATTERN 11111111112111112-----------1---1111112848321112-171--1111111211---- 23L2424222222323622-262233222222E54664CE22861222222232625222636244412132222366522241-111D8CB2D422--53G3A342452222222222222222232433222422331126662D47121111-1-1----3--243A1------------12212222432464664673876458444422256969C254322243435583633433665332463453334432434224434362222334331122112132234523344324422233123213311152316A447643475657344662322244132186644D9A52942223532233E922222222224286322323233333333332-322234333I23242722JE227622322B232222332333333338222242222222222223522222222222222222-322622222D23324223333656G32222324422I623454643432384322293333212222222434I33229522243A53323223743547333233332321111111121232121241222CA252492123353369444423352824434--25333------43552344447465835-522684646256533343267593DH43325362435254445743233322-522232222442--12------211232223322323222223323333422222232262333323333396722222222234448333533335522233333332222--33442333--------522------1--1--------2-1-33211111121112E2 --------------------------------------------------------------------------------------------------------------------------------------------------------------------------1-----------------2---------- ---------------1----------1---111-1------------------------------------------1---------1----------1--1-----1-1--1---------1--1------------------------------------------------- STR:NPRED 294 STR:RPRED 99.0 SQ:SECSTR ###cHHHHHHHHHHHTGGGccHHHHHHHHHHHHHHHHHHHHTTccTcccccHHHHHHHHHHHHHHTccHHHHHHHHHHHHHHHHTcccccGGGcHHHHHHHHHHHHHHHTTTcccccHHHHHHHTTcccHHHHHHHHHHHHHHHHTccHHHHHHcccTTcccccTTccccccccHHHHHHHHHTccccTTccccccccTTccccccccccccHHHHHHHHHHHHHHHHcccccccccccccTTHHHHHHHHHHHHccccHHHHHHTTTcccTTcccccHHHHcccccHHHHHGGTTT DISOP:02AL 296-298| PSIPRED ccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHcccccHHHccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccHHHHHHHHHHccccccccHHHHHHHHHHHHHcccHHHHHcccHHHccccccEEEEEcccccEEEEEccHHHHHHHHHHHHHHHHHccccccccEEEEccccccccHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHccccHHHHHHHHccccHHHHHHHHHccHHHHHHHHHHHcccc //