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Lactobacillus salivarius UCC118 (lsal0)
Gene : ABD99758.1
DDBJ      :             Integrase/recombinase, XerC/CodV family
Swiss-Prot:             

Homologs  Archaea  44/68 : Bacteria  833/915 : Eukaryota  1/199 : Viruses  8/175   --->[See Alignment]
a.60.9d.163.1
:298 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   2->289 1a0pA PDBj 3e-32 34.2 %
:RPS:PDB   5->294 2crxA PDBj 4e-40 13.5 %
:RPS:SCOP  4->110 1crxA1  a.60.9.1 * 1e-18 13.3 %
:RPS:SCOP  110->298 1aihA  d.163.1.1 * 1e-32 30.0 %
:HMM:SCOP  1->99 1a0pA1 a.60.9.1 * 2.6e-17 27.8 %
:HMM:SCOP  105->296 4crxA2 d.163.1.1 * 9.2e-56 45.5 %
:RPS:PFM   9->87 PF02899 * Phage_integr_N 3e-11 37.2 %
:RPS:PFM   116->283 PF00589 * Phage_integrase 1e-34 48.7 %
:HMM:PFM   111->286 PF00589 * Phage_integrase 1.3e-49 40.2 169/173  
:HMM:PFM   6->87 PF02899 * Phage_integr_N 1.5e-20 35.8 81/84  
:BLT:SWISS 1->298 XERC_PEDPA 6e-90 54.7 %

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID ABD99758.1 GT:GENE ABD99758.1 GT:PRODUCT Integrase/recombinase, XerC/CodV family GT:DATABASE GIB00337CH01 GT:ORG lsal0 GB:ACCESSION GIB00337CH01 GB:LOCATION complement(974435..975331) GB:FROM 974435 GB:TO 975331 GB:DIRECTION - GB:PRODUCT Integrase/recombinase, XerC/CodV family GB:NOTE COG4974 [L] Site-specific recombinase XerD GB:PROTEIN_ID ABD99758.1 GB:DB_XREF GI:90821119 LENGTH 298 SQ:AASEQ MELTWIEEFKKYLLIEKQYSDETLKAYSEDLQHFVDFIDETGGAKSFKEIGSNDVHAYMSYLYDRYEMTSISRMISSLRAFYNFLIKNELTDENPFAYVQLKRHPRSLPRFFYEKEMTALFEATEGDTQMLIRDRALLESLYGTGMRVSECTGLKMENVDLTNKKMLLHGKGDKDRLVPFGSYCQEALQRYFEQTRTPLMEKYHRDHDLVFVNHYGNPLTPAGVAYILKQIVKRSSLHTSIHPHELRHTFATHLMSNGADLRAVQELLGHSSLSTTQIYTHVTPEHLQRDYRKFFPRA GT:EXON 1|1-298:0| BL:SWS:NREP 1 BL:SWS:REP 1->298|XERC_PEDPA|6e-90|54.7|296/301| BL:PDB:NREP 1 BL:PDB:REP 2->289|1a0pA|3e-32|34.2|266/271| RP:PDB:NREP 1 RP:PDB:REP 5->294|2crxA|4e-40|13.5|288/305| RP:PFM:NREP 2 RP:PFM:REP 9->87|PF02899|3e-11|37.2|78/84|Phage_integr_N| RP:PFM:REP 116->283|PF00589|1e-34|48.7|158/168|Phage_integrase| HM:PFM:NREP 2 HM:PFM:REP 111->286|PF00589|1.3e-49|40.2|169/173|Phage_integrase| HM:PFM:REP 6->87|PF02899|1.5e-20|35.8|81/84|Phage_integr_N| GO:PFM:NREP 5 GO:PFM GO:0003677|"GO:DNA binding"|PF02899|IPR004107| GO:PFM GO:0015074|"GO:DNA integration"|PF02899|IPR004107| GO:PFM GO:0003677|"GO:DNA binding"|PF00589|IPR002104| GO:PFM GO:0006310|"GO:DNA recombination"|PF00589|IPR002104| GO:PFM GO:0015074|"GO:DNA integration"|PF00589|IPR002104| RP:SCP:NREP 2 RP:SCP:REP 4->110|1crxA1|1e-18|13.3|105/110|a.60.9.1| RP:SCP:REP 110->298|1aihA|1e-32|30.0|160/170|d.163.1.1| HM:SCP:REP 1->99|1a0pA1|2.6e-17|27.8|97/0|a.60.9.1|1/1|lambda integrase-like, N-terminal domain| HM:SCP:REP 105->296|4crxA2|9.2e-56|45.5|187/212|d.163.1.1|1/1|DNA breaking-rejoining enzymes| OP:NHOMO 2800 OP:NHOMOORG 886 OP:PATTERN 11111111111111112---------------111111-547311112--41--1111111112---- 22I2422222222223422-232233222222A3264468235512222221426242226242434-213233326632224--111567524222--52A37342242222222222222222232333222321113124752A3711--11--------3--232B1-------------31-2233332454555754676457343322255859C4544222335356C2733322886322493393332232433336623252222336321111-1212223442434411111111111111221115231694466434756693446623223341421A7644BB952843233632233A622222222224284222323222222222222-322233232G23222722HG2266222229222222322333333336222232322222222222222222222222222222-223322222925524232222443F22322349424A7224645534323833222834322-2222222434G43228412254C54325223533566333232231321111111111131111241212CA262482123354269342523352824334--25333------43443324447455625-422685646346533333235394CH53324362534243335743233323-322242222232--12------221232223322222222132323333422222232453333323333265722222222234438333433336532233333332222--32442333--------422------1--1--------2-1-22211111121112A2 --------------------------------------------------------------------------------------------------------------------------------------------------------------------------1---------------------------- ---------------1----------1-----1--------------------------------------------1------1-----------------------------------1----1---------------1--------------------------------- STR:NPRED 298 STR:RPRED 100.0 SQ:SECSTR cHHHHHHHHHHHHHTGGGccHHHHHHHHHHHHHHHHHHHHccTTccTTTTcHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHTTTcccGGGcHHHHHHHHHHHHHHHHHHccccccccccHHHTcccHHHHHHHHHHHHHHHHcccHHHHHHcccccEEEEETTEEEEccccEEccHHHHHHHHHHHHTTTcTTcTTcccccEEETTTEEEccccccccHHHHHHHHHHHHHHHHccccccTTHHHHHHHHHHHHccccGGGGHHHHTcccHHHHHHHHTTccTTccHHHHHHcTTT DISOP:02AL 297-299| PSIPRED ccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHcccccHHHccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcccHHHHHcccHHHccccccEEEEEcccccEEEEEccHHHHHHHHHHHHHHHHHHHcccccccccEEEccccccccHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHccccHHHHHHHHccccHHHHHHHHHccHHHHHHHHHHHcccc //