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Lactobacillus salivarius UCC118 (lsal0)
Gene : ABD99807.1
DDBJ      :             Putative 23S rRNA m(5)C methyltransferase
Swiss-Prot:             

Homologs  Archaea  51/68 : Bacteria  708/915 : Eukaryota  197/199 : Viruses  0/175   --->[See Alignment]
c.66.1
:456 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   22->292 2frxB PDBj 7e-37 38.3 %
:RPS:PDB   4->292 2as0A PDBj 2e-24 15.0 %
:RPS:SCOP  4->292 1ixkA  c.66.1.38 * 3e-76 33.7 %
:HMM:SCOP  1->294 1ixkA_ c.66.1.38 * 5.5e-62 30.8 %
:RPS:PFM   75->291 PF01189 * Nol1_Nop2_Fmu 2e-41 46.0 %
:HMM:PFM   72->292 PF01189 * Nol1_Nop2_Fmu 1.7e-41 33.3 216/283  
:BLT:SWISS 3->452 RSMF_VIBVY 1e-43 32.2 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID ABD99807.1 GT:GENE ABD99807.1 GT:PRODUCT Putative 23S rRNA m(5)C methyltransferase GT:DATABASE GIB00337CH01 GT:ORG lsal0 GB:ACCESSION GIB00337CH01 GB:LOCATION complement(1016726..1018096) GB:FROM 1016726 GB:TO 1018096 GB:DIRECTION - GB:PRODUCT Putative 23S rRNA m(5)C methyltransferase GB:NOTE COG0144 [J] tRNA and rRNA cytosine-C5-methylases GB:PROTEIN_ID ABD99807.1 GB:DB_XREF GI:90821168 LENGTH 456 SQ:AASEQ MDLPKEFIEKYQKLLGDEAEAFLASLDEKSVIGFRLNPLKRHYKDVDYDLTASVPFAQDGFIGKVSGRSLEHQAGYVYSQDLSAMYVAAVANAQPGDKVLDLCAAPGGKSTQLAEQLNNQGLLVSNEINTKRAKILAENMERIGAKNVIITNESPDNLAKVFKGYFDKIVVDAPCSGEGMFRKDHSAVKYWHKDYPAECAHRQKLILEEAMKMLKTGGELVYSTCTFAPEEDEQIVAWLLENYDLTLEPITKYDGMDSGRPEFADGNEDLTKTIRLMPHHFEGEGQFLAKLKFNGEAVSVAKKKAKKKKKSKTISADELDLWHKFVSDFSSQELNFADQDLRINGDYLYYYNKDWLDINKLKYVRPGLMLGTFKKNRFEPSYALALAVQEAAEENVIELSKDQWAEYVAGNIIFLSGNTRKNGWYLLRCEEKNFAFGKLVNGTIKNFFPKGLRFQA GT:EXON 1|1-456:0| BL:SWS:NREP 1 BL:SWS:REP 3->452|RSMF_VIBVY|1e-43|32.2|432/472| SEG 297->312|avsvakkkakkkkksk| SEG 383->394|alalavqeaaee| BL:PDB:NREP 1 BL:PDB:REP 22->292|2frxB|7e-37|38.3|256/447| RP:PDB:NREP 1 RP:PDB:REP 4->292|2as0A|2e-24|15.0|260/382| RP:PFM:NREP 1 RP:PFM:REP 75->291|PF01189|2e-41|46.0|202/229|Nol1_Nop2_Fmu| HM:PFM:NREP 1 HM:PFM:REP 72->292|PF01189|1.7e-41|33.3|216/283|Nol1_Nop2_Fmu| RP:SCP:NREP 1 RP:SCP:REP 4->292|1ixkA|3e-76|33.7|279/305|c.66.1.38| HM:SCP:REP 1->294|1ixkA_|5.5e-62|30.8|292/0|c.66.1.38|1/1|S-adenosyl-L-methionine-dependent methyltransferases| OP:NHOMO 2023 OP:NHOMOORG 956 OP:PATTERN 33134544333333341212121311111111---11111111-----1----95555554---12-- 111---11111111-11----1---1-------111-------------------------1-1-11---1----------1------1111-111---111111221111111111-11111111111111-121--------1-21121111-11111111112-22211111111111111--2211-22111111111111111111111111122211111111112311111111111111111111122222221222222221222211112222222222232222222222222222222222222222222121111111111111122111111212112221111121111212222-11111222222222212222222222222222122222-2212221222222112112111223322222212222222222222211211212------------------------------22222211112222222222222222222222222222222222121122222122122222222222222222222111-1221111112111112111111-4-11---1-1111-1-----------11-11332111111224544444444444444444--11221------22221222222222222-2222222222222222222222221112222222222222222222221221-111111111111--1211111111111-111111-11111-11111111111--1121111111111111111111-1-11-1122222222222233----1--11111111-2---------------1------1---1--------1----------111-111-22 33445451D6622254221222222222222122122222222221222222221122222233322213233331222233333343-222223242322124432385A7556B62345585844A4BY7-66E3242735643545253392776544A37633524C15533345U7651225652763866672 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 444 STR:RPRED 97.4 SQ:SECSTR ccETTEEEEEEccHHHTTHHHHHHHHHHcTTccEEEEEEccHHHHHTTcccEEEEEEccccEEEEEETTEEEEEEcccccTTHHHHHHHGGGccTTcEEEETTcTTTHHHHHHHHHHTTccEEEEEEccHHHHHHHHHHHHHTTcGGGEEEEccHHHHHHHHTccEEEEEEcccccTTcTTccccGGGccccGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEEccTTccHHHHHHHHHHHTcccHHHHTTEEEEccccccccTTcEEEEEGcccTcGGGcccEEEEEEEEEEEcccccccccHHHHHHHHccEEHHHHEEEEEcccHHHHHTcTTccccccTTcEEccTEETTEEccccccccc#EEcGGGGGGTcGGGGccEEEEcccccccccEEEEcccccccccEEEEEcTTE#EEcHHHHH#####HHHTcHHHHHHHHHHHTTc##### DISOP:02AL 298-321,456-457| PSIPRED cccHHHHHHHHHHHcHHHHHHHHHHHcccccEEEEEccccccHHHHHHHHHHccccccccEEEccccccHHHHccEEEEEcHHHHHHHHHcccccccEEEEEcccccHHHHHHHHHccccEEEEEEEccHHHHHHHHHHHHHccccEEEEEEcccccccccccccccEEEEcccccccccccccHHHHHcccHHHHHHHHHHHHHHHHHHHHHcccccEEEEEEccccHHcHHHHHHHHHHHcccEEEEcccccccccccccccccccccccEEEEEEEcccccEEEEEEEEEccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHccccccccccEEEEEccEEEEccccccHHcccEEEEccEEEEEEEcccEEEEHHHHHHHHHHcccccccccHHHHHHHHccccEEEccccccccEEEEEEccEEEEEEEEcccEEcccccccccccc //