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Lactobacillus salivarius UCC118 (lsal0)
Gene : ABD99816.1
DDBJ      :             Transcriptional regulator, AraC family
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  209/915 : Eukaryota  1/199 : Viruses  0/175   --->[See Alignment]
a.24.16a.4.1b.82.4
:278 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   187->270 1ti9A PDBj 2e-09 27.4 %
:RPS:PDB   13->119 2arcB PDBj 2e-09 15.9 %
:RPS:PDB   173->274 1bl0A PDBj 4e-19 24.5 %
:RPS:SCOP  26->122 1xjaA  b.82.4.1 * 2e-11 14.6 %
:RPS:SCOP  172->269 1v4aA1  a.24.16.4 * 7e-16 8.2 %
:HMM:SCOP  2->154 2arcA_ b.82.4.1 * 1.5e-25 32.2 %
:HMM:SCOP  169->219 1bl0A1 a.4.1.8 * 4.1e-07 33.3 %
:HMM:SCOP  222->269 1d5yA2 a.4.1.8 * 1.5e-10 33.3 %
:RPS:PFM   30->120 PF02311 * AraC_binding 4e-13 33.0 %
:RPS:PFM   233->270 PF00165 * HTH_AraC 3e-05 42.1 %
:HMM:PFM   24->121 PF02311 * AraC_binding 2.6e-25 26.5 98/136  
:HMM:PFM   191->218 PF00165 * HTH_AraC 3.6e-07 39.3 28/42  
:HMM:PFM   231->269 PF00165 * HTH_AraC 2.9e-10 39.5 38/42  
:BLT:SWISS 8->269 MSMR_STRMU 1e-26 26.7 %
:PROS 223->265|PS00041|HTH_ARAC_FAMILY_1
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID ABD99816.1 GT:GENE ABD99816.1 GT:PRODUCT Transcriptional regulator, AraC family GT:DATABASE GIB00337CH01 GT:ORG lsal0 GB:ACCESSION GIB00337CH01 GB:LOCATION 1025573..1026409 GB:FROM 1025573 GB:TO 1026409 GB:DIRECTION + GB:PRODUCT Transcriptional regulator, AraC family GB:NOTE COG2207 [K] AraC-type DNA-binding domain-containing proteins GB:PROTEIN_ID ABD99816.1 GB:DB_XREF GI:90821177 LENGTH 278 SQ:AASEQ MEKAVSLNFISVPSDQLQLANVGRSDTLSGHKYGPAVRPYYLIHYILAGSGTFKTDQSIYKLHAGQGFLIEPGQETTYIADKNTPWSYVWIGFSGNFADQLMQQIPLNQREPIFSLNDPKRLIELVNLLLLKSVNSTTKKLLNLSYLLEFLSIISNATIISRESTTSISDIYVEKAISLINKNFPNISAASLAQMIGLDRSYLGKRFKKVTGMTLQTYLKNYKITQARHLIESTNLSLLEISQRCGYQRVDSLARTFKATYGLTPSDFRLQQKELLTL GT:EXON 1|1-278:0| BL:SWS:NREP 1 BL:SWS:REP 8->269|MSMR_STRMU|1e-26|26.7|262/278| PROS 223->265|PS00041|HTH_ARAC_FAMILY_1|PDOC00040| SEG 125->151|lvnllllksvnsttkkllnlsyllefl| SEG 158->171|tiisresttsisdi| BL:PDB:NREP 1 BL:PDB:REP 187->270|1ti9A|2e-09|27.4|84/129| RP:PDB:NREP 2 RP:PDB:REP 13->119|2arcB|2e-09|15.9|107/164| RP:PDB:REP 173->274|1bl0A|4e-19|24.5|102/116| RP:PFM:NREP 2 RP:PFM:REP 30->120|PF02311|4e-13|33.0|91/130|AraC_binding| RP:PFM:REP 233->270|PF00165|3e-05|42.1|38/40|HTH_AraC| HM:PFM:NREP 3 HM:PFM:REP 24->121|PF02311|2.6e-25|26.5|98/136|AraC_binding| HM:PFM:REP 191->218|PF00165|3.6e-07|39.3|28/42|HTH_AraC| HM:PFM:REP 231->269|PF00165|2.9e-10|39.5|38/42|HTH_AraC| GO:PFM:NREP 5 GO:PFM GO:0006355|"GO:regulation of transcription, DNA-dependent"|PF02311|IPR003313| GO:PFM GO:0003700|"GO:transcription factor activity"|PF00165|IPR000005| GO:PFM GO:0005622|"GO:intracellular"|PF00165|IPR000005| GO:PFM GO:0006355|"GO:regulation of transcription, DNA-dependent"|PF00165|IPR000005| GO:PFM GO:0043565|"GO:sequence-specific DNA binding"|PF00165|IPR000005| RP:SCP:NREP 2 RP:SCP:REP 26->122|1xjaA|2e-11|14.6|96/165|b.82.4.1| RP:SCP:REP 172->269|1v4aA1|7e-16|8.2|98/151|a.24.16.4| HM:SCP:REP 2->154|2arcA_|1.5e-25|32.2|152/0|b.82.4.1|1/1|Regulatory protein AraC| HM:SCP:REP 169->219|1bl0A1|4.1e-07|33.3|51/54|a.4.1.8|1/2|Homeodomain-like| HM:SCP:REP 222->269|1d5yA2|1.5e-10|33.3|48/0|a.4.1.8|2/2|Homeodomain-like| OP:NHOMO 346 OP:NHOMOORG 210 OP:PATTERN -------------------------------------------------------------------- ------------------------------------------------------------1-1---------------------------12-2-------2-2-1---3------------------------------------2112-------------1----1----------------------1----1----21--1-1-6411-1----1------------W---------------------1----11-1-11--1--23-2-111-1-1----11111111111111111111111111322---222-44119111345344341---5336311--45--------1---3-18--1--1-----------1-----------------------------------------3-----------------1---------1-----------------------------------------------------1------1-------1-1-1---------------1---1---------------------1--------1----------1----------------------------------------------1------------1----1---------------1111-1-1112111211-111111211111111111211111-1111111111111111112111------111111111111----------------11-------------------------1-----------------------------1-------1------11111-----------11----------------------------------------------------- -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------4------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 212 STR:RPRED 76.3 SQ:SECSTR ############cccEEEEEEEETTcTTcccEEETTccccEEEEEEEEEcEEEEETTEEEEEcTTcEEEEcTTccEEEEEcTTccEEEEEEEEcccGGGGGGGcccEETTEEEEcccTTTTT##################################################HHHHHHHHHTTTTccccHHHHHHccccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHccccHHHHHHHTTcccHHHHHHHHHHHHcccHHHHHTcccc#### DISOP:02AL 1-1,276-279| PSIPRED cccccccccccccccccHHHHHHHHHccccccccccccccEEEEEEEccEEEEEEccEEEEEccccEEEEccccEEEEEEcccccEEEEEEEccHHHHHHHHHHccccccccEEEEcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHccccccHHHHHHHHcccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHccccHHHHHHHHHHHHcccHHHHHHHHHccccc //