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Lactobacillus salivarius UCC118 (lsal0)
Gene : ABD99852.1
DDBJ      :             RNA binding protein
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  204/915 : Eukaryota  16/199 : Viruses  0/175   --->[See Alignment]
d.66.1
:262 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   5->165 2fphX PDBj 2e-24 32.5 %
:RPS:PDB   184->239 2cqjA PDBj 3e-05 12.5 %
:RPS:SCOP  182->233 1vioA2  d.66.1.5 * 4e-09 19.2 %
:HMM:SCOP  182->239 1vioA2 d.66.1.5 * 3.2e-09 31.0 %
:HMM:PFM   184->228 PF01479 * S4 1.6e-06 33.3 45/48  
:BLT:SWISS 3->253 YLMH_BACSU 3e-49 39.6 %

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID ABD99852.1 GT:GENE ABD99852.1 GT:PRODUCT RNA binding protein GT:DATABASE GIB00337CH01 GT:ORG lsal0 GB:ACCESSION GIB00337CH01 GB:LOCATION complement(1069060..1069848) GB:FROM 1069060 GB:TO 1069848 GB:DIRECTION - GB:PRODUCT RNA binding protein GB:NOTE COG2302 [S] Uncharacterized conserved protein, contains S4-like domain GB:PROTEIN_ID ABD99852.1 GB:DB_XREF GI:90821213 LENGTH 262 SQ:AASEQ MDSNILQHFRKDEEPLISQLSDYIMQAENEYRPILTHFLNPREQYIAQSLIHKKQDVKVSFSGGYKNAERKRAIFYPSYYEVQDDDFNLELIMIKYPVKFTSLTHGQILGTLANSGLDREVIGDIIEQNDTWQFLCEKEVSDYFRLQIDRVGKIKVRLEDAPLDEIVVPELNWQEKMVTSSSLRIDSLVSVTFNISRESSKNLIKAEKVQLNWMTVARPDYEVKYGDILSIRGYGRLRIDDLLGVTRKDKLRIRVSVLEKNN GT:EXON 1|1-262:0| BL:SWS:NREP 1 BL:SWS:REP 3->253|YLMH_BACSU|3e-49|39.6|250/257| BL:PDB:NREP 1 BL:PDB:REP 5->165|2fphX|2e-24|32.5|160/165| RP:PDB:NREP 1 RP:PDB:REP 184->239|2cqjA|3e-05|12.5|56/71| HM:PFM:NREP 1 HM:PFM:REP 184->228|PF01479|1.6e-06|33.3|45/48|S4| RP:SCP:NREP 1 RP:SCP:REP 182->233|1vioA2|4e-09|19.2|52/58|d.66.1.5| HM:SCP:REP 182->239|1vioA2|3.2e-09|31.0|58/58|d.66.1.5|1/1|Alpha-L RNA-binding motif| OP:NHOMO 227 OP:NHOMOORG 220 OP:PATTERN -------------------------------------------------------------------- --------------------------------------------------------------------------------------------------------------------------------------------------111111111111111--111111111-11--1-111-------1-1111111111111111111111111111111111111111111111111-1111111111111111111111111111111111111111111111111111111111111111111111111111111111111-111111111111111111111111-1-1-1111--111-1111-11-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------11118111111111-11------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 242 STR:RPRED 92.4 SQ:SECSTR ####ccccccGGGHHHHHHHHHHHHHHHHHTccEEcccccHHHHHHHH#HHHHHTTcEEEEGGGTcccccccEEEEcTTccccGGGGcEEEEEEEcccccHHHHHHHHHcccccccccGGGEEEEEccccccEEEEEGGGHHHHHHHccEETTEEcEEEEccGGG###cccTHHHHHHHHHccEHHHHHHTTccccHHHHHHHHHTTcEEETTcccccTTcEEEHHHHTTEEEccccccEEEcccccccc############ DISOP:02AL 1-1,261-263| PSIPRED ccccHHHcccHHHHHHHHHHHHHHHHHHcccEEEEcccccHHHHHHHHHHHHccccEEEEEEcccccccEEEEEEcccccccccccccEEEEEEEcccccccccHHHHHHHHHHccccccccccEEEEccEEEEEEEHHHHHHHHHHHHHHcccEEEEEEccHHHHcccccccEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEccEEEcccccEEccccEEEEEcccEEEEEEEccEEccccEEEEEEEEEEcc //