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Lactobacillus salivarius UCC118 (lsal0)
Gene : ABD99901.1
DDBJ      :             Ribonuclease Z
Swiss-Prot:RNZ_LACS1    RecName: Full=Ribonuclease Z;         Short=RNase Z;         EC=3.1.26.11;AltName: Full=tRNase Z;AltName: Full=tRNA 3 endonuclease;

Homologs  Archaea  67/68 : Bacteria  341/915 : Eukaryota  95/199 : Viruses  0/175   --->[See Alignment]
d.157.1
:317 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   1->308 2fk6A PDBj 1e-94 56.4 %
:RPS:PDB   1->307 2cbnA PDBj 6e-41 46.7 %
:RPS:SCOP  2->308 1y44A1  d.157.1.7 * 1e-79 56.0 %
:HMM:SCOP  1->308 1y44A1 d.157.1.7 * 3.2e-92 40.0 %
:RPS:PFM   35->78 PF00753 * Lactamase_B 7e-08 54.5 %
:HMM:PFM   25->78 PF00753 * Lactamase_B 1.9e-13 39.2 51/194  
:HMM:PFM   181->221 PF01225 * Mur_ligase 0.00072 26.8 41/76  
:BLT:SWISS 1->317 RNZ_LACS1 e-174 100.0 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID ABD99901.1 GT:GENE ABD99901.1 GT:PRODUCT Ribonuclease Z GT:DATABASE GIB00337CH01 GT:ORG lsal0 GB:ACCESSION GIB00337CH01 GB:LOCATION complement(1121823..1122776) GB:FROM 1121823 GB:TO 1122776 GB:DIRECTION - GB:PRODUCT Ribonuclease Z GB:NOTE COG1234 [R] Metal-dependent hydrolases of the beta-lactamase superfamily III GB:PROTEIN_ID ABD99901.1 GB:DB_XREF GI:90821262 LENGTH 317 SQ:AASEQ MELEFLGTGAGSPSKSRNVSAVALKLLDEIKKIWLFDVGEGTQHQILNTTIRPRKIDKIFITHMHGDHIFGLPGFLSSRSFQGGEKMGPLTIYGPKGISDFVNISLKVSQTKLSYELNFVELEEEGLLLENDRFKVYAYKLDHRIECWGYRIEEKDYPGELQVEKLREAKAPSGPIYGRLKAGEVVTLEDGRTIDGKDFIGKAKKGRIVTILGDTRQTPNLKLLAKDADVLVHESTFGKGEGKLARNYHHSTCVQAATLAKEVGVKQLLLTHISARYVGKMVKVLEKEAKKVFPNTKVVKDFDTFNIPFPERKDDEQ GT:EXON 1|1-317:0| SW:ID RNZ_LACS1 SW:DE RecName: Full=Ribonuclease Z; Short=RNase Z; EC=3.1.26.11;AltName: Full=tRNase Z;AltName: Full=tRNA 3 endonuclease; SW:GN Name=rnz; OrderedLocusNames=LSL_1093; SW:KW Complete proteome; Endonuclease; Hydrolase; Metal-binding; Nuclease;tRNA processing; Zinc. SW:EXACT T SW:FUNC + BL:SWS:NREP 1 BL:SWS:REP 1->317|RNZ_LACS1|e-174|100.0|317/317| GO:SWS:NREP 5 GO:SWS GO:0004519|"GO:endonuclease activity"|Endonuclease| GO:SWS GO:0016787|"GO:hydrolase activity"|Hydrolase| GO:SWS GO:0046872|"GO:metal ion binding"|Metal-binding| GO:SWS GO:0004518|"GO:nuclease activity"|Nuclease| GO:SWS GO:0008033|"GO:tRNA processing"|tRNA processing| SEG 116->130|elnfveleeegllle| BL:PDB:NREP 1 BL:PDB:REP 1->308|2fk6A|1e-94|56.4|305/307| RP:PDB:NREP 1 RP:PDB:REP 1->307|2cbnA|6e-41|46.7|304/306| RP:PFM:NREP 1 RP:PFM:REP 35->78|PF00753|7e-08|54.5|44/171|Lactamase_B| HM:PFM:NREP 2 HM:PFM:REP 25->78|PF00753|1.9e-13|39.2|51/194|Lactamase_B| HM:PFM:REP 181->221|PF01225|0.00072|26.8|41/76|Mur_ligase| GO:PFM:NREP 1 GO:PFM GO:0016787|"GO:hydrolase activity"|PF00753|IPR001279| RP:SCP:NREP 1 RP:SCP:REP 2->308|1y44A1|1e-79|56.0|266/269|d.157.1.7| HM:SCP:REP 1->308|1y44A1|3.2e-92|40.0|305/0|d.157.1.7|1/1|Metallo-hydrolase/oxidoreductase| OP:NHOMO 560 OP:NHOMOORG 503 OP:PATTERN 1111111111111121-111111111112111111111111111111111211111111111111111 ----1--------------------1------1---1-------1--------11-----11---1-1111----------------111111111---11111111-11111111111111111--------------------11111111111111111111111111111111111111--------111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111--1111111111111-111111111----11-------------------1-------------11--------------------------------------------------------------------------1-----------------------------------------------------------------------------------------------------------------------------------11111--1------------------------1------1---1----------------------------------11-1-111111111111-11-1111111111111111111----12222222222222222-1111111-----------------------------1-----------------111111--11------1----11111---------------------------------------------------1111111111---------------------------1----------- 2-----1-1-----1--------------------------------------------------------------------------121-2321111112111-1222111111-11111-11111131-1111111111221111111111-11112---2---1---2111-11E11122111--1122121-3 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 308 STR:RPRED 97.2 SQ:SECSTR cEEEEEEcccccccccccccEEEEEcccccccEEEEcccTTHHHHHHTccccTTTEEEEEcccccHHHHTTHHHHHHHHHHTTcGGcccEEEEEcTTHHHHHHHHHHHTTccccccEEEEEcccEEEEEcccEEEEEEEEcccccccEEEEEEEccccccccHHHHHHTTccccHHHHHHHHTcccEETTTEEccGGGTccccccccEEEEccccccccTHHHHHTTccEEEEEccccGGGHHHHHHTTcccHHHHHHHHHHHTccEEEEEcccTTccHHHHHHHHHHHHTTcccEEEccTTcEEEcT######### DISOP:02AL 309-318| PSIPRED cEEEEEEcccccccccccccEEEEEEEccccEEEEEEccHHHHHHHHHccccHHHccEEEEEcccHHHHcccHHHHHHHHHccccccccEEEEEcHHHHHHHHHHHHccccccccEEEEEEEccccEEEEcccEEEEEEEcccccccccEEEEEccccccccHHHHHHcccccccHHHHHccccEEEEccccEEcHHHEEEccccccEEEEEccccccHHHHHHHccccEEEEEcccccccHHHHHHcccccHHHHHHHHHHccccEEEEEEEcccccHHHHHHHHHHHHHHccccEEEccccEEEEEccccccccc //