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Lactobacillus salivarius UCC118 (lsal0)
Gene : ABD99944.1
DDBJ      :             23S rRNA methyltransferase
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  725/915 : Eukaryota  15/199 : Viruses  0/175   --->[See Alignment]
c.116.1
:170 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   5->155 1mxiA PDBj 2e-29 45.2 %
:RPS:PDB   4->156 3e5yA PDBj 2e-31 42.3 %
:RPS:SCOP  4->169 1v2xA  c.116.1.1 * 2e-37 29.4 %
:HMM:SCOP  2->161 1mxiA_ c.116.1.1 * 2.2e-36 34.8 %
:RPS:PFM   5->147 PF00588 * SpoU_methylase 4e-04 27.5 %
:HMM:PFM   4->147 PF00588 * SpoU_methylase 1.5e-33 26.8 138/142  
:BLT:SWISS 1->165 Y956_LISMF 9e-56 60.1 %

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID ABD99944.1 GT:GENE ABD99944.1 GT:PRODUCT 23S rRNA methyltransferase GT:DATABASE GIB00337CH01 GT:ORG lsal0 GB:ACCESSION GIB00337CH01 GB:LOCATION complement(1170455..1170967) GB:FROM 1170455 GB:TO 1170967 GB:DIRECTION - GB:PRODUCT 23S rRNA methyltransferase GB:NOTE COG0219 [J] Predicted rRNA methylase (SpoU class) GB:PROTEIN_ID ABD99944.1 GB:DB_XREF GI:90821305 LENGTH 170 SQ:AASEQ MANHIVLFEPLMPANTGNIARTCAGTNTELHLIEPLGFSTDDKYMKRAGLDYWDKVKITYHPNLPAFLETIPENGELYIVSKFASKAYTEADYTNTEKEHYFLFGKETTGLPEMFMRQNPEKCIRIPQNDEHIRALNLSNTAAIVVYEALRQQGFPNLETTHTYENDKLK GT:EXON 1|1-170:0| BL:SWS:NREP 1 BL:SWS:REP 1->165|Y956_LISMF|9e-56|60.1|163/169| BL:PDB:NREP 1 BL:PDB:REP 5->155|1mxiA|2e-29|45.2|146/156| RP:PDB:NREP 1 RP:PDB:REP 4->156|3e5yA|2e-31|42.3|149/156| RP:PFM:NREP 1 RP:PFM:REP 5->147|PF00588|4e-04|27.5|138/143|SpoU_methylase| HM:PFM:NREP 1 HM:PFM:REP 4->147|PF00588|1.5e-33|26.8|138/142|SpoU_methylase| GO:PFM:NREP 3 GO:PFM GO:0003723|"GO:RNA binding"|PF00588|IPR001537| GO:PFM GO:0006396|"GO:RNA processing"|PF00588|IPR001537| GO:PFM GO:0008173|"GO:RNA methyltransferase activity"|PF00588|IPR001537| RP:SCP:NREP 1 RP:SCP:REP 4->169|1v2xA|2e-37|29.4|153/192|c.116.1.1| HM:SCP:REP 2->161|1mxiA_|2.2e-36|34.8|155/156|c.116.1.1|1/1|alpha/beta knot| OP:NHOMO 749 OP:NHOMOORG 740 OP:PATTERN -------------------------------------------------------------------- -----11111111111111-111111111111111111111----11-1---111111-------11----11111111-11-------------------11-------111111111111111---------------------1111111111111111111111111111111111111111111111111111111111111111111111111111111-11111111111111111111111111111111111111111111111111111111111111111111111111111111111111112211111111111111111111111111111111111-111111111111111111-111-1111-11111111111111111111111111111-11111111111-111111111111111-1-1----------------------11-----------------------------1111-11111111111111111111111111111111111111111111111111111111111111111111111111--11111111111111111111----11-111-11111111-1-------1111111111111111111111111111111111111--111-1------11111111111111111-1111111111111111111111111111111111111111111111111111-111111111111--111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111-11111111----------1----1-111-111111111111111----------111 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------111116111-121-2-11------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 153 STR:RPRED 90.0 SQ:SECSTR ###EEEEEccccHHHHHHHHHHHHHHTcEEEEEccccccccHHHHHHTTccHHHHHTcEEEccHHHHHHHHcccGGEEEEccTTcEEGGGcccccccTTcEEEEEcTTTcccHHHTTccGGGEEEccccccccccccHHHHHHHHHHHHHHHTTTT############## DISOP:02AL 164-171| PSIPRED ccEEEEEEccccccHHHHHHHHHHHccccEEEEccccccccHHHHHHHHcccHHHccEEEEccHHHHHHHHHHcccEEEEEccccccHHHHHcccccccEEEEEccccccccHHHHHHccccEEEEEcccccccHHHHHHHHHHHHHHHHHHcccccccccccccccccc //