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Lactobacillus salivarius UCC118 (lsal0)
Gene : ABE00010.1
DDBJ      :             DNA primase
Swiss-Prot:             

Homologs  Archaea  3/68 : Bacteria  89/915 : Eukaryota  0/199 : Viruses  6/175   --->[See Alignment]
c.37.1
:516 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   404->486 1gw1A PDBj 3e-04 34.2 %
:HMM:SCOP  186->383 1tueA_ c.37.1.20 * 4.3e-15 21.7 %
:RPS:PFM   102->188 PF08706 * D5_N 8e-08 35.6 %
:HMM:PFM   33->193 PF08706 * D5_N 5.8e-13 18.4 125/150  
:HMM:PFM   403->474 PF03288 * Pox_D5 3e-09 27.3 66/86  
:BLT:SWISS 27->164 RLMN_STRGC 7e-04 33.3 %
:BLT:SWISS 126->493 PRIM_BPP4 7e-14 23.8 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID ABE00010.1 GT:GENE ABE00010.1 GT:PRODUCT DNA primase GT:DATABASE GIB00337CH01 GT:ORG lsal0 GB:ACCESSION GIB00337CH01 GB:LOCATION 1234187..1235737 GB:FROM 1234187 GB:TO 1235737 GB:DIRECTION + GB:PRODUCT DNA primase GB:NOTE COG0433 [R] Predicted ATPase GB:PROTEIN_ID ABE00010.1 GB:DB_XREF GI:90821371 LENGTH 516 SQ:AASEQ MASNNIDDLLDKATKQQEKQKQKPVTMSQLFSILKEQGQNWRDEHVKVLKNGEEKIQHIPPRTIADILKRYVIFAVIGKKEKDFEKANLAYYDLDAGIYKHNSTNIEKLIIAVERSTSIKQRRETMEYLRLDAPQKHPTESRNLIIVGNGVFNKNTKKLEPYNPRYIFTSKISTNYNPQAQEPNFKGWSLSKWFKDIAENDNEKEILLWQSLACAINPNLTPDVAIFLVDNGQGRTGKSTFERLLENLVGIDNHAPLKLKEFEEDFKLANAQGVKLIIGDDNNPNDYNKTSENFKRVATGETILVNPKRLPPFSTQFNCFIVQSMNGLPRFKDDSDALLRRIKIIKFNHQYNDKTANKDIKEKYIKDKRLLEWILSKVIVMDFDFMIDTEESRQEIKELKIANDPVAYYVNEHINDLKSQRLPIVFLFKHFQATSDYENNPQKMKQSTFTRRLRPLLEAKGYTYSKNNLAPLTYWNIDDEKLLEQYDINYKYRVKVDITKYQPLFERPEDNQDETN GT:EXON 1|1-516:0| BL:SWS:NREP 2 BL:SWS:REP 27->164|RLMN_STRGC|7e-04|33.3|138/100| BL:SWS:REP 126->493|PRIM_BPP4|7e-14|23.8|341/777| SEG 15->23|kqqekqkqk| BL:PDB:NREP 1 BL:PDB:REP 404->486|1gw1A|3e-04|34.2|76/375| RP:PFM:NREP 1 RP:PFM:REP 102->188|PF08706|8e-08|35.6|87/145|D5_N| HM:PFM:NREP 2 HM:PFM:REP 33->193|PF08706|5.8e-13|18.4|125/150|D5_N| HM:PFM:REP 403->474|PF03288|3e-09|27.3|66/86|Pox_D5| HM:SCP:REP 186->383|1tueA_|4.3e-15|21.7|189/205|c.37.1.20|1/1|P-loop containing nucleoside triphosphate hydrolases| OP:NHOMO 118 OP:NHOMOORG 98 OP:PATTERN ----------------------------1---------------1-------1--------------- --------11----------------------------------------------------------1------------------------------------------------------------------------------1--------------------------------------------2--------------1-------------11-------1-----1-----1----11--1111-----1----1----13-1--113-1---1---------1--2--1-3121-231222-111-11111-----------1--1--111-----1---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1-----------------------------------------11-----111------------------------------------------------------------------------------------------1---1--111-------12--212-2-1-------1--------11-1---2---1-11--1--1111-------------1------------------1-----------1---------------------------------------------------------------------------------------------------1---------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- --------------------1----------------------------------------------------------------1-------------------------------------------1111------------------------------------------ STR:NPRED 76 STR:RPRED 14.7 SQ:SECSTR ###################################################################################################################################################################################################################################################################################################################################################################################################################HHHHHHHH#TcccTTcccccEEEEccccTTccTTTccHHHHHH#HHHHHHHHHHHTccEEEcccc#####cccccHHHHHTcc############################## DISOP:02AL 1-3,8-8,11-28,50-54,505-517| PSIPRED cccccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHEEEEEccccccccccccEEEEcHHHccccccHHHHHHHHHHHcccccHHHHHHHHHHHHHHcccccccccccEEEEcccEEEccccccccccccEEEEEEccccccccccccccHHccHHHHHHHHccccHHHHHHHHHHHHHHHcccccHHEEEEEEEEccccccHHHHHHHHHHHHccccEEEccHHHHcccccccHHHccEEEEEcccccccEEccHHHHHHHccccEEEEEEcccccEEEEcccEEEEEcccccccccccccEEEEEEEEEEccccccccccHHHHHHHHccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHccHHHHHHHHHHccccccEEEHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHcccEEcccccccccccccccHHcccccccccccccccccccccccccccccccccc //