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Lactobacillus salivarius UCC118 (lsal0)
Gene : ABE00312.1
DDBJ      :             Transcription regulator, GntR family
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  426/915 : Eukaryota  1/199 : Viruses  0/175   --->[See Alignment]
a.4.5d.190.1
:241 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   26->234 3bwgB PDBj 3e-17 27.4 %
:RPS:PDB   1->234 3eetA PDBj 4e-32 16.7 %
:RPS:SCOP  6->70 1e2xA1  a.4.5.6 * 7e-15 24.6 %
:RPS:SCOP  87->234 2ooiA1  d.190.1.2 * 8e-31 25.7 %
:HMM:SCOP  2->74 1hw1A1 a.4.5.6 * 8.2e-12 35.6 %
:HMM:SCOP  82->234 2fa1A1 d.190.1.2 * 8.7e-36 29.4 %
:RPS:PFM   7->67 PF00392 * GntR 2e-09 39.3 %
:RPS:PFM   95->224 PF07702 * UTRA 2e-20 33.8 %
:HMM:PFM   96->229 PF07702 * UTRA 8e-34 32.1 134/141  
:HMM:PFM   6->67 PF00392 * GntR 5.4e-17 38.7 62/64  
:BLT:SWISS 6->226 GMUR_BACSU 9e-33 34.4 %

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID ABE00312.1 GT:GENE ABE00312.1 GT:PRODUCT Transcription regulator, GntR family GT:DATABASE GIB00337CH01 GT:ORG lsal0 GB:ACCESSION GIB00337CH01 GB:LOCATION 1563310..1564035 GB:FROM 1563310 GB:TO 1564035 GB:DIRECTION + GB:PRODUCT Transcription regulator, GntR family GB:NOTE COG1522 [K] Transcriptional regulators GB:PROTEIN_ID ABE00312.1 GB:DB_XREF GI:90821673 LENGTH 241 SQ:AASEQ MAELVYKNIISDLKEKIFAGKFTDMKLPDERSLAEQYNVSRSSVKRALNKMSNEGIIFKKRGSGTFINPLYLKNESIFNYEEGSNLGISDNFRLKGKKPQTKILDFQVIKPTSELQRDLFLSPEDFVYKIIRLRLFEDEPFMIETGYIPIKILPKLSRTQLESSIFAYIQSELNQTASKSFMSIYAEPSTSEDQNLLKLKENEPVSVMEGIFFLDNGTPFEFSQMRLHFKYLKFNTFINLD GT:EXON 1|1-241:0| BL:SWS:NREP 1 BL:SWS:REP 6->226|GMUR_BACSU|9e-33|34.4|218/237| BL:PDB:NREP 1 BL:PDB:REP 26->234|3bwgB|3e-17|27.4|197/225| RP:PDB:NREP 1 RP:PDB:REP 1->234|3eetA|4e-32|16.7|227/238| RP:PFM:NREP 2 RP:PFM:REP 7->67|PF00392|2e-09|39.3|61/64|GntR| RP:PFM:REP 95->224|PF07702|2e-20|33.8|130/141|UTRA| HM:PFM:NREP 2 HM:PFM:REP 96->229|PF07702|8e-34|32.1|134/141|UTRA| HM:PFM:REP 6->67|PF00392|5.4e-17|38.7|62/64|GntR| GO:PFM:NREP 6 GO:PFM GO:0003700|"GO:transcription factor activity"|PF00392|IPR000524| GO:PFM GO:0005622|"GO:intracellular"|PF00392|IPR000524| GO:PFM GO:0006355|"GO:regulation of transcription, DNA-dependent"|PF00392|IPR000524| GO:PFM GO:0003677|"GO:DNA binding"|PF07702|IPR011663| GO:PFM GO:0030528|"GO:transcription regulator activity"|PF07702|IPR011663| GO:PFM GO:0045449|"GO:regulation of transcription"|PF07702|IPR011663| RP:SCP:NREP 2 RP:SCP:REP 6->70|1e2xA1|7e-15|24.6|65/73|a.4.5.6| RP:SCP:REP 87->234|2ooiA1|8e-31|25.7|148/157|d.190.1.2| HM:SCP:REP 2->74|1hw1A1|8.2e-12|35.6|73/0|a.4.5.6|1/1|"Winged helix" DNA-binding domain| HM:SCP:REP 82->234|2fa1A1|8.7e-36|29.4|153/0|d.190.1.2|1/1|Chorismate lyase-like| OP:NHOMO 1139 OP:NHOMOORG 427 OP:PATTERN -------------------------------------------------------------------- -21141-2---1--2------3--12-----15222-3433----21-----212--1--11-2223233--------4---4-------1------------------1-----------------------------1----------11----------------1--------------431-----1264444455514443446555474433452547777878--1222223233222321--1175425A22848A922865384331221114443222333333334334444344444443355221555312-28222222222526--23331--1-1----45-2--3---12111-3-1-222---------22--------33333332334---1------2--3113112111-421-1-111---1122-----------------------------------------------1---13311311113-1111222211111-4124431--332-2-------21---1--121--------------2----1------1------1--1----1------------------------------111-----1---------------------------1------3441-314443431355-444542154543333433445422---3123232333233333-44234441-111121111121---1-----------114----1----------22222------133232223-11-2--11-----------11-1111111211--22222222-------1-------------------------------------------23---3-1-1-- --------------------------------------------------------------------------------------------------------------------------------------------------------------------------4---------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 237 STR:RPRED 98.3 SQ:SECSTR ccccHHHHHHHHHHHHHHHTcccTcccccHHHHHHHHTccHHHHHHHHHHHHHTTcEEEcccEEEccccccccEEEEccccccccccHHHHHcccTTccEEEEEEEEEEEccHHHHHHHTccTTcEEEEEEEEEEETETTEEEEEEEEEHHHHTTcTTcTTccTTTTcHHHHTTccccEEEEEEEEEEccHHHHHHHTccTTcEEEEEEEEEEEETTEEEEEEEEEEETTTEEEccc#### DISOP:02AL 1-2| PSIPRED ccccHHHHHHHHHHHHHHcccccccccccHHHHHHHHcccHHHHHHHHHHHHHcccEEEEcccEEEEccccccccHHHHHHHHccccHHHHHHHcccccEEEEEEEEEEcccHHHHHHcccccccEEEEEEEEEEEccEEEEEEEEcccHHHcccccHHHHcccHHHHHHHHccccEEEEEEEEEEEEccHHHHHHcccccccEEEEEEEEEEcccccEEEEEEEEEcccEEEEEEEEEcc //