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Lactobacillus salivarius UCC118 (lsal0)
Gene : ABE00326.1
DDBJ      :             Hypothetical exported protein
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  264/915 : Eukaryota  0/199 : Viruses  5/175   --->[See Alignment]
b.109.1d.2.1
:812 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   188->329 3fi7A PDBj 2e-21 42.8 %
:BLT:PDB   304->397 1gvmF PDBj 8e-06 29.6 %
:BLT:PDB   397->682 2vyuA PDBj 6e-23 35.2 %
:BLT:PDB   688->775 1gvmF PDBj 5e-13 45.2 %
:BLT:PDB   750->812 2g7cB PDBj 1e-04 37.5 %
:RPS:PDB   192->328 153lA PDBj 4e-09 14.3 %
:RPS:PDB   410->567 1e88A PDBj 2e-07 14.6 %
:RPS:PDB   651->812 1e88A PDBj 2e-07 15.7 %
:RPS:SCOP  192->328 153lA  d.2.1.5 * 5e-10 14.3 %
:RPS:SCOP  341->432 1h8gA  b.109.1.1 * 8e-06 21.1 %
:RPS:SCOP  437->666 2bibA1  b.109.1.1 * 5e-26 24.5 %
:RPS:SCOP  715->805 1h8gA  b.109.1.1 * 5e-09 29.5 %
:HMM:SCOP  268->485 2bibA1 b.109.1.1 * 2.2e-31 35.9 %
:HMM:SCOP  487->663 2bibA1 b.109.1.1 * 1.9e-34 45.1 %
:HMM:SCOP  665->811 2bibA1 b.109.1.1 * 1.3e-28 43.1 %
:RPS:PFM   192->323 PF01832 * Glucosaminidase 2e-25 49.6 %
:HMM:PFM   189->324 PF01832 * Glucosaminidase 1.6e-40 44.6 130/134  
:HMM:PFM   380->390 PF01473 * CW_binding_1 5.8e-05 63.6 11/19  
:HMM:PFM   422->433 PF01473 * CW_binding_1 0.00031 75.0 12/19  
:HMM:PFM   465->479 PF01473 * CW_binding_1 5.3e-05 64.3 14/19  
:HMM:PFM   597->612 PF01473 * CW_binding_1 0.00096 46.7 15/19  
:HMM:PFM   641->653 PF01473 * CW_binding_1 7.5e-05 53.8 13/19  
:HMM:PFM   752->763 PF01473 * CW_binding_1 0.00044 45.5 11/19  
:BLT:SWISS 248->812 TOXA_CLODI 3e-39 31.3 %
:REPEAT 11|327->366|367->409|410->452|453->496|497->540|541->583|584->626|628->672|674->738|740->782|783->811
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID ABE00326.1 GT:GENE ABE00326.1 GT:PRODUCT Hypothetical exported protein GT:DATABASE GIB00337CH01 GT:ORG lsal0 GB:ACCESSION GIB00337CH01 GB:LOCATION 1585410..1587848 GB:FROM 1585410 GB:TO 1587848 GB:DIRECTION + GB:PRODUCT Hypothetical exported protein GB:NOTE COG5263 [R] FOG: Glucan-binding domain (YG repeat) GB:PROTEIN_ID ABE00326.1 GB:DB_XREF GI:90821687 LENGTH 812 SQ:AASEQ MTEKKKTISDNSLVKQAYIASGIALLSLGAGTVVNSNNVKADTLNTKNTNSTTVANTTKIDTSQSSVNNSESQNNNSQTNSNTLQLSKRNVQVNSTETANTQNIANAKNATVATNTTSKVNQATVSKNTNTDYSYSGTIEKDVSSTNTDAAKNATNVQGAVKVDSNNVSYNVSLNNVPSSVSNFVNKVGNDAIRVANEYGLYASVMLAQASLESAWGQSALATNAHNLFGVKYRGYGDYVTMPTLESYGGRWYTINAKFQKYNSYYDSLVGYAQLIKNGYPGSTKSGAASYQIAANNLLHGKWGAYATDPSYVNKIINMINTYGFYKFDNPQSNTHQKFENGHWYLYKDGKRQTGLRYITSQGKTVFYNNQGQMQYGQKFINGHWYYFDEVTGAMLTGFKYIPSQKKNVYYNSQGQMLYGSQKINGNWYLFDSFDGAMKYGWQKLDNGKRTVFYDDNGKMVHGQKNIKGNWYYFDDNDGHELVSTFKWIPTQNKTVYYNNQGQMLYGKQLINGKTYYFDTFNGAMRANTFYYNNETKGIQYYDSDGQVVYGQKNINSHWYLFDSKTGNMITGFYYIPYQNKTVYYNDKGQMLYGQKFINGHWYLFDNFNGAMKTGFVHIPTQNKTVYYSKNEASLGQMLYGFQNINGKTYYFDTFDGAMKTGWSYISENKSLYYFKNNGQAAQGKLTLNNTSYDFDSQGKLLSHAEQFSPNGTDWYFFDDDGYIATGWKYISYQNKKVYYDKKTGIMKHGQVNIDGHWYFFDKVTGAMKTGWVYIPEQNKTVYYNKDGQMVYGTQIINGKTYYFDTFDGTLK GT:EXON 1|1-812:0| BL:SWS:NREP 1 BL:SWS:REP 248->812|TOXA_CLODI|3e-39|31.3|536/2710| NREPEAT 1 REPEAT 11|327->366|367->409|410->452|453->496|497->540|541->583|584->626|628->672|674->738|740->782|783->811| SEG 62->83|tsqssvnnsesqnnnsqtnsnt| SEG 105->121|anaknatvatnttskvn| SEG 161->186|vkvdsnnvsynvslnnvpssvsnfvn| BL:PDB:NREP 5 BL:PDB:REP 188->329|3fi7A|2e-21|42.8|138/177| BL:PDB:REP 304->397|1gvmF|8e-06|29.6|91/134| BL:PDB:REP 397->682|2vyuA|6e-23|35.2|264/300| BL:PDB:REP 688->775|1gvmF|5e-13|45.2|84/134| BL:PDB:REP 750->812|2g7cB|1e-04|37.5|60/254| RP:PDB:NREP 3 RP:PDB:REP 192->328|153lA|4e-09|14.3|133/185| RP:PDB:REP 410->567|1e88A|2e-07|14.6|149/160| RP:PDB:REP 651->812|1e88A|2e-07|15.7|134/160| RP:PFM:NREP 1 RP:PFM:REP 192->323|PF01832|2e-25|49.6|125/133|Glucosaminidase| HM:PFM:NREP 7 HM:PFM:REP 189->324|PF01832|1.6e-40|44.6|130/134|Glucosaminidase| HM:PFM:REP 380->390|PF01473|5.8e-05|63.6|11/19|CW_binding_1| HM:PFM:REP 422->433|PF01473|0.00031|75.0|12/19|CW_binding_1| HM:PFM:REP 465->479|PF01473|5.3e-05|64.3|14/19|CW_binding_1| HM:PFM:REP 597->612|PF01473|0.00096|46.7|15/19|CW_binding_1| HM:PFM:REP 641->653|PF01473|7.5e-05|53.8|13/19|CW_binding_1| HM:PFM:REP 752->763|PF01473|0.00044|45.5|11/19|CW_binding_1| GO:PFM:NREP 2 GO:PFM GO:0004040|"GO:amidase activity"|PF01832|IPR002901| GO:PFM GO:0009253|"GO:peptidoglycan catabolic process"|PF01832|IPR002901| RP:SCP:NREP 4 RP:SCP:REP 192->328|153lA|5e-10|14.3|133/185|d.2.1.5| RP:SCP:REP 341->432|1h8gA|8e-06|21.1|90/95|b.109.1.1| RP:SCP:REP 437->666|2bibA1|5e-26|24.5|212/232|b.109.1.1| RP:SCP:REP 715->805|1h8gA|5e-09|29.5|88/95|b.109.1.1| HM:SCP:REP 268->485|2bibA1|2.2e-31|35.9|209/0|b.109.1.1|1/3|Cell wall binding repeat| HM:SCP:REP 487->663|2bibA1|1.9e-34|45.1|162/0|b.109.1.1|2/3|Cell wall binding repeat| HM:SCP:REP 665->811|2bibA1|1.3e-28|43.1|137/0|b.109.1.1|3/3|Cell wall binding repeat| OP:NHOMO 592 OP:NHOMOORG 269 OP:PATTERN -------------------------------------------------------------------- ------------------------------------------------------------------------------35-L------111------------------1-----------------------------------------------------------------------------------1-----1-1---------11-1--1---2--16666664--1111111111111111111722211242223288113629856351212222555A88A89988971111111111111211332---2---1R-------L-L-3--1564-3-2-1-2--------------------------------------------------------------------------------------------------------------------------------------------------1111-1111112111111111111111111-----111-11111---1111-1-111--------111-1---------------------------------------------------------------1-1--1--------1----1----1------1--------1111-111111111111-1111111111111111111---11-1111111111111111111--111111-----------------------------11------1-------------------1----1----1111--------------111111111111111------------------------------------------------------------------------ ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ---------------1---------------------------------------------------------1---------------------------------------------------1-1--------------------1-------------------------- STR:NPRED 625 STR:RPRED 77.0 SQ:SECSTR ###########################################################################################################################################################################################HHHHHHHHHHHHTccHHHHHHHHHHHHTTTTTccTTccTTccEETTTTTEETTTccccccTTcHHHHHHHHHHHHHHHHHHHHHcTHHHTccHHHHHHHHHHHHHHcGGGccccTTTTTcGGGcHHHHHHHHHHHHHHTTccTcccccEEEEETTEEEEEcTcccccEEEEEccccccEEccccccccccEccccccEEcccccccccccccEEEEETTEEEcccEEEEEEEEEEEccccccTTccccEEEETTccccTTTcEEEEEEEEccGGGcEEEEEETTEEEEEEEccccccccEEcccccEEETTEEEEEEEcccccccccEEEEEEETTEEEEEEccEEcccccEEEEEETTEEEEcccccccEEEEEETTTTEEEEEEcEEEccccccccccccTTcccccTTcccccccccccccEccEEEEccccccEEEEcccTcEEEEEEEEEEEcccccccccETEETTTEEEcEEcccEEEEEEccccEEEEEEcccccccEEcccccEEEEEcEEEccTccccccGGGTcccccccEEEEETTTEEEccccccccccccEEcccccEEEccccHHHHccEEEccTTcccEEETcTTccccccEEETTEEEcccccTTccc DISOP:02AL 1-9,61-85,811-813| PSIPRED cccccccccccHHHHHHHHHccEEEEEEcccEEEcccccEEEEEccccccccEEEccEEEccccccccccccccccccccccEEEEEEEEEEEEccccccccccccccccEEEEcccccccEEEEEccccccEEEEEEEEEccccccccccccccccEEEEEEccccEEEEEEEccccHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHcccccccccccccEEEEEEEEccccEEEEEEEEccccEEEEEEEEEEEcccHHHHHHHHHHHHcccccccHHcccccHHHHHHHHHHHHcEEEccccHHHHHHHHHccccEEEEcccccccEEEEEEccEEEEEccccEEEEEEEEcccccEEEEcccccEEEEEEEEccEEEEEcccccEEEccEEEEcccccEEEEcccccEEEcEEEEccEEEEEEccccEEEEEEEEEEcccEEEEEcccccEEEEEEEEccEEEEEccccccEEEEEEEEEEEccEEEEEcccccEEEccEEEcccEEEEEccccEEEEEEEEEcccccEEEEEcccccEEEEEEEEccEEEEEEcccccEEEEEEEEcccccEEEEcccccEEEEEEEEccEEEEEEccccEEEEEEEEEcccccEEEEEccccccccEEccEEEEccEEEEEccccccEEEEEEEEccccEEEEEcccccEEEEEEEEccEEEEEcccccEEccEEEEEccccEEEEEcccccEEEEEEEEcccccEEEEEccccEEEEEEEEEccEEEEEcccccHHHccEEEEcccccEEEEcccccEEEEEEEEccEEEEEEccccEEc //