[GTOP] [HELP] [ORGANISMS] [SEARCH] [SUMMARY]
Lactobacillus salivarius UCC118 (lsal0)
Gene : ABE00391.1
DDBJ      :             ABC transporter substrate binding protein
Swiss-Prot:             

Homologs  Archaea  4/68 : Bacteria  341/915 : Eukaryota  0/199 : Viruses  0/175   --->[See Alignment]
c.92.2
:288 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   27->280 1pszA PDBj 4e-18 32.5 %
:RPS:PDB   27->284 3cx3B PDBj 5e-33 17.3 %
:RPS:SCOP  25->282 1xvlA1  c.92.2.2 * 3e-45 16.5 %
:HMM:SCOP  26->286 1toaA_ c.92.2.2 * 1.4e-63 29.5 %
:RPS:PFM   27->273 PF01297 * SBP_bac_9 4e-23 29.3 %
:HMM:PFM   12->280 PF01297 * SBP_bac_9 3e-58 25.3 265/303  
:BLT:SWISS 1->280 MTSA_STROR 2e-19 33.5 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID ABE00391.1 GT:GENE ABE00391.1 GT:PRODUCT ABC transporter substrate binding protein GT:DATABASE GIB00337CH01 GT:ORG lsal0 GB:ACCESSION GIB00337CH01 GB:LOCATION complement(1668193..1669059) GB:FROM 1668193 GB:TO 1669059 GB:DIRECTION - GB:PRODUCT ABC transporter substrate binding protein GB:NOTE COG0803 [P] ABC-type metal ion transport system, periplasmic component/surface adhesin GB:PROTEIN_ID ABE00391.1 GB:DB_XREF GI:90821752 LENGTH 288 SQ:AASEQ MKKILSLSLGIIALCLFFLPSNVRADKIKVVTTTDFYGQVAEEVLGNKGKVISIINNPSVDPHDYEPTTQTAKQVSNANIVIYNGLGYDSWITKLSNGKKKIDVATDVMHAKDGDNEHLWYNSKTMGKLADYLVKEYAKLDPKNETYYKKNAEKYKQKLTKLQTLIAKIKKNSDNKEVAVSEPVFDYALKDMGYKIANRHFAKATEDGSDPSYSDIKKLQNDIKHKKIAFFVENTQSDSKVISSIVSLCQKYDVPVIKVTETTPKGKDYLQWMSSEYEQVLKIQEDGK GT:EXON 1|1-288:0| BL:SWS:NREP 1 BL:SWS:REP 1->280|MTSA_STROR|2e-19|33.5|275/309| SEG 154->171|kykqkltklqtliakikk| BL:PDB:NREP 1 BL:PDB:REP 27->280|1pszA|4e-18|32.5|249/286| RP:PDB:NREP 1 RP:PDB:REP 27->284|3cx3B|5e-33|17.3|248/255| RP:PFM:NREP 1 RP:PFM:REP 27->273|PF01297|4e-23|29.3|242/291|SBP_bac_9| HM:PFM:NREP 1 HM:PFM:REP 12->280|PF01297|3e-58|25.3|265/303|SBP_bac_9| GO:PFM:NREP 2 GO:PFM GO:0030001|"GO:metal ion transport"|PF01297|IPR006127| GO:PFM GO:0046872|"GO:metal ion binding"|PF01297|IPR006127| RP:SCP:NREP 1 RP:SCP:REP 25->282|1xvlA1|3e-45|16.5|254/279|c.92.2.2| HM:SCP:REP 26->286|1toaA_|1.4e-63|29.5|254/277|c.92.2.2|1/1|"Helical backbone" metal receptor| OP:NHOMO 409 OP:NHOMOORG 345 OP:PATTERN -------------------------------------------1----1--1---------------2 ----211----22-11211-1-11111111111---2211111111---1112121-1-----12-1----2333222------------------1------------------------------------------1------1---11--1----11-1----111--111---1-11------11-1-111111--111---1--1--12-1--------1112111---------------------11213211222221133112141112121111121111111111111111-1111111111--------111-12111-1--1-1--11-111--1111------2111-11-1111-31-------12111---1-----1-2-----------1-1---1------1111--112-----1---1--11-1---111111111111--------------------------------------------111111111111121111111111-----------------1----1-----1------------------------------------------------1----------------1----11--------------------------------1----------3-12-21---1-122-------2-1-1--21------111221111111111111111111211111111-2-------------1---------------1-1-1-111111111----------------1212-1-11-111111111111-1--1-----111-------------------1---------------1--------------------------111---------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 260 STR:RPRED 90.3 SQ:SECSTR ########################ccccEEEEccHHHHHHHHHHHGGGGGGcEEEccccccTTTccccHHHHHHHHHccEEEEccTTTcGGGGTcTTTTccccEEEccTcccccccccGGGcHHHHHHHHHHHHHHTTTccTTcTTEEHHHHHHHHHHHHHHHHHHHHHTTTccccEEEEcccccHHHHHHTTcEEEEEEEcccccTTccccHHHHHHHHHHHHHHcccEEEEccccccHHcTTTHHHHcccEEEEccccccccccccHHHHHHHHHHHHTccc#### DISOP:02AL 1-1,98-107,205-213,286-289| PSIPRED cHHHHHHHHHHHHHHHHHccccccccccEEEEEcHHHHHHHHHHccccEEEEEEEcccccccccccccHHHHHHHHHccEEEEEcccHHHHHHHHHccccccccccccccccccccccEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccEEEEEccHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHccccEEEEcccccHHHHHHHHHHHHHcccEEEcccccccccccHHHHHHHHHHHHHHHHHccc //