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Lactobacillus salivarius UCC118 (lsal0)
Gene : ABE00430.1
DDBJ      :             Transcription regulator
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  61/915 : Eukaryota  1/199 : Viruses  0/175   --->[See Alignment]
a.142.1a.4.5c.44.2d.112.1
:694 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:RPS:PDB   5->65 2acjC PDBj 1e-04 21.4 %
:RPS:PDB   411->493 3czcA PDBj 5e-04 14.5 %
:RPS:PDB   540->679 2a0jA PDBj 1e-05 17.6 %
:RPS:SCOP  4->91 2d1hA1  a.4.5.50 * 2e-06 19.0 %
:RPS:SCOP  307->376 1h99A2  a.142.1.1 * 2e-05 12.9 %
:RPS:SCOP  540->640 1xizA  d.112.1.1 * 3e-04 20.4 %
:HMM:SCOP  1->68 1j5yA1 a.4.5.1 * 3.6e-05 34.4 %
:HMM:SCOP  86->155 1j5yA1 a.4.5.1 * 0.001 33.8 %
:HMM:SCOP  278->406 1h99A1 a.142.1.1 * 6.3e-05 19.5 %
:HMM:SCOP  408->498 1vkrA_ c.44.2.1 * 1.5e-07 27.6 %
:HMM:SCOP  531->680 1a6jA_ d.112.1.1 * 1.1e-10 21.2 %
:HMM:PFM   89->161 PF05043 * Mga 1.1e-09 24.3 70/87  
:HMM:PFM   7->47 PF08279 * HTH_11 2e-08 39.0 41/55  
:HMM:PFM   540->679 PF00359 * PTS_EIIA_2 6e-12 22.0 132/142  
:HMM:PFM   412->467 PF02302 * PTS_IIB 8.6e-06 21.8 55/90  
:BLT:SWISS 4->642 MTLR_BACSU 8e-45 23.2 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID ABE00430.1 GT:GENE ABE00430.1 GT:PRODUCT Transcription regulator GT:DATABASE GIB00337CH01 GT:ORG lsal0 GB:ACCESSION GIB00337CH01 GB:LOCATION complement(1713902..1715986) GB:FROM 1713902 GB:TO 1715986 GB:DIRECTION - GB:PRODUCT Transcription regulator GB:NOTE COG3711 [K] Transcriptional antiterminator GB:PROTEIN_ID ABE00430.1 GB:DB_XREF GI:90821791 LENGTH 694 SQ:AASEQ MIILTKRQKEILSILLRISNGTTIKQLEESVNVSRRTIYREFNELKLDLEQRGLTISNIDGKYVLQGQERDIEQLREDIGDSPSQQEMSVSERQSILAAMLLLEDEPQKIVSLAMSLKVSEGTVQRDLTEVALALGKYGITLIKKKGVGISVKGTEFQRRQVLCGILLSEINDYRFFKYIGDDQDVGGNNYFLRLLPKKRIQLVTQALNKSVLKKINIKSDHQSMQLILLTTICLERAASSDNLGEIKAIDGSLKYQSLVYQFMAEYSQIKPLKLDRKEIIYLANQFQSCDNESSPTFYDNDQELALSLQIKSFVQTVSEKMKWDFQRNPAFLKRLTTHIAGLVSHQVERLPNTRIETLTRLSERYQDLFNAIKQAWKVSFPDEKLAQSELQLLLLYFANEYTSRHYRGDLKALVICENGIGTSSILGQRLKQEIPEVKKVKISKIAQLQDLDLSSYDLILSTLKLPGFPRKYQIVSPLLLDDEISNIKDYLKDYQENYISKEAEDNNVYLNNSKLQPTKRLNGIAIGALFCTELVNGIEVIRLNNKATESLSQVINEITGRIGQGIVKDKKQVAANLKRRIDLAPIGIPNSNMALLHTSSPEVKRCYFTVIDLDQSLKMKAMDQTEIEVSRMLLMLGPERLSDIEQDVMGMVSSMIVMSDDTLKLFATGTKEELQNAIAVRFLQEIKSAIPIR GT:EXON 1|1-694:0| BL:SWS:NREP 1 BL:SWS:REP 4->642|MTLR_BACSU|8e-45|23.2|629/694| SEG 143->154|ikkkgvgisvkg| SEG 391->396|lqllll| SEG 449->464|lqdldlssydlilstl| SEG 648->662|dvmgmvssmivmsdd| RP:PDB:NREP 3 RP:PDB:REP 5->65|2acjC|1e-04|21.4|56/66| RP:PDB:REP 411->493|3czcA|5e-04|14.5|83/89| RP:PDB:REP 540->679|2a0jA|1e-05|17.6|136/146| HM:PFM:NREP 4 HM:PFM:REP 89->161|PF05043|1.1e-09|24.3|70/87|Mga| HM:PFM:REP 7->47|PF08279|2e-08|39.0|41/55|HTH_11| HM:PFM:REP 540->679|PF00359|6e-12|22.0|132/142|PTS_EIIA_2| HM:PFM:REP 412->467|PF02302|8.6e-06|21.8|55/90|PTS_IIB| RP:SCP:NREP 3 RP:SCP:REP 4->91|2d1hA1|2e-06|19.0|84/102|a.4.5.50| RP:SCP:REP 307->376|1h99A2|2e-05|12.9|70/105|a.142.1.1| RP:SCP:REP 540->640|1xizA|3e-04|20.4|98/155|d.112.1.1| HM:SCP:REP 1->68|1j5yA1|3.6e-05|34.4|64/65|a.4.5.1|1/2|"Winged helix" DNA-binding domain| HM:SCP:REP 86->155|1j5yA1|0.001|33.8|65/65|a.4.5.1|2/2|"Winged helix" DNA-binding domain| HM:SCP:REP 278->406|1h99A1|6.3e-05|19.5|113/115|a.142.1.1|1/1|PTS-regulatory domain, PRD| HM:SCP:REP 408->498|1vkrA_|1.5e-07|27.6|87/0|c.44.2.1|1/1|PTS system, Lactose/Cellobiose specific IIB subunit| HM:SCP:REP 531->680|1a6jA_|1.1e-10|21.2|146/150|d.112.1.1|1/1|Phoshotransferase/anion transport protein| OP:NHOMO 68 OP:NHOMOORG 62 OP:PATTERN -------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------11---------------111122----11-1-1------11-111111111111111--112---11-----11--11-1----1----------1111111111-1-----1-----------------1-1-12-----------1----------------------1---221------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 278 STR:RPRED 40.1 SQ:SECSTR ##ccccHHHHHHHHHHHTcTTccHHHHHHHHTccHHHHHHHHHH####HHHTTccEEEEcccccE#########################################################################################################################################################################################################################################################################################################################################################EEEEEEccccHHHHHHHHHHHHHHcEEEEEEcHHHHHHHGGGccEEEEETTTGGGTTTccccEEEEccTcHHHHHHHHHHHHc##############################################GGEEEEEccc#cHHHHHHHHHHHHccTTcccHHHHHHHHHHHHTTccccccc#cEEccEEEETTccccEEEEEEEEEEEccccTT##cccEEEEEEEEEEcccHHHHHHHHHHHHHHHTcHHHHHHHHHcccHHHHHHHH############### DISOP:02AL 1-2,4-4,498-502| PSIPRED cccccHHHHHHHHHHHHccccccHHHHHHHHcccHHHHHHHHHHHHHHHHHcccEEEEEcccEEEEEcHHHHHHHHHHccccccHHcccHHHHHHHHHHHHHHccccccHHHHHHHHcccHHHHHHHHHHHHHHHHHcccEEEEEcccEEEEcccHHHHHHHHHHHHHHHHcHHHHHHHHHHHHccccHHHHHHHHcHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHcccccHHHccccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHcccccccEEEEEccccHHHHHHHHHHHHHHcccccEEEEEEEEEccccccccHHHEEEccccccccccEEEEcccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHEEcccccccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHcccEEccccEEEEccccHHHHHHEEEEEEccccccccccccccEEEEEEEEEEccccccHHHHHHHHHHHHHHHHcccHHHHHHcccHHHHHHHHHHHHHHHHHHHcccc //