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Lactobacillus salivarius UCC118 (lsal0)
Gene : ABE00451.1
DDBJ      :             Transcriptional regulator, Cro/CI family
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  17/915 : Eukaryota  1/199 : Viruses  1/175   --->[See Alignment]
a.35.1
:267 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   1->55 1utxA PDBj 7e-04 27.3 %
:RPS:PDB   2->60 3dnvB PDBj 9e-12 20.3 %
:RPS:SCOP  2->93 1s4kA  a.35.1.6 * 8e-12 12.0 %
:HMM:SCOP  2->71 1x57A1 a.35.1.12 * 3e-13 37.1 %
:RPS:PFM   4->58 PF01381 * HTH_3 2e-06 40.0 %
:HMM:PFM   4->58 PF01381 * HTH_3 4.3e-18 36.4 55/55  
:HMM:PFM   119->206 PF05636 * DUF795 0.00019 19.8 86/388  
:BLT:SWISS 3->79 IMMR_BACSU 3e-10 42.9 %
:BLT:SWISS 118->235 SA155_YEAST 6e-04 30.6 %
:REPEAT 2|213->233|236->256
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID ABE00451.1 GT:GENE ABE00451.1 GT:PRODUCT Transcriptional regulator, Cro/CI family GT:DATABASE GIB00337CH01 GT:ORG lsal0 GB:ACCESSION GIB00337CH01 GB:LOCATION complement(1736463..1737266) GB:FROM 1736463 GB:TO 1737266 GB:DIRECTION - GB:PRODUCT Transcriptional regulator, Cro/CI family GB:NOTE COG0583 [K] Transcriptional regulator GB:PROTEIN_ID ABE00451.1 GB:DB_XREF GI:90821812 LENGTH 267 SQ:AASEQ MNRIKELRVEKHKTQKEIAEFLNITEQALSYYERGLREPKLKTWQALANFFNVPVSYLQGLGVSREKIINDLVEKMIDDKGNSFSSFNLLNFELSKKVTLGDVSYLNNTFNLNLSNNIVDKLIDNNNRNALRYLVSKCIPFVNDYNFLASVPSNLDDYYKALEKKIIDLDNPFNDIFSINTEIDNRDVKIFESICNLLVLDVETKDKLIRYSDDKKIDISNKIQDLFDLLTNDIKDKRILDIRQNIINLLDVYANDDYKLTSSFKTK GT:EXON 1|1-267:0| BL:SWS:NREP 2 BL:SWS:REP 3->79|IMMR_BACSU|3e-10|42.9|77/127| BL:SWS:REP 118->235|SA155_YEAST|6e-04|30.6|108/1002| NREPEAT 1 REPEAT 2|213->233|236->256| SEG 106->117|lnntfnlnlsnn| BL:PDB:NREP 1 BL:PDB:REP 1->55|1utxA|7e-04|27.3|55/66| RP:PDB:NREP 1 RP:PDB:REP 2->60|3dnvB|9e-12|20.3|59/71| RP:PFM:NREP 1 RP:PFM:REP 4->58|PF01381|2e-06|40.0|55/55|HTH_3| HM:PFM:NREP 2 HM:PFM:REP 4->58|PF01381|4.3e-18|36.4|55/55|HTH_3| HM:PFM:REP 119->206|PF05636|0.00019|19.8|86/388|DUF795| GO:PFM:NREP 1 GO:PFM GO:0043565|"GO:sequence-specific DNA binding"|PF01381|IPR001387| RP:SCP:NREP 1 RP:SCP:REP 2->93|1s4kA|8e-12|12.0|92/120|a.35.1.6| HM:SCP:REP 2->71|1x57A1|3e-13|37.1|70/0|a.35.1.12|1/1|lambda repressor-like DNA-binding domains| OP:NHOMO 22 OP:NHOMOORG 19 OP:PATTERN -------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1--------1---------------------------------11---1-1----1----12--------------------------------------------------111---1--------1------1---------------------12------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- --------------------------------------------------------------------------------------------------------------------------------------------------------------------------2---------------------------- --------------------------------------------------------------------------------------------------------------1---------------------------------------------------------------- STR:NPRED 94 STR:RPRED 35.2 SQ:SECSTR cHHHHHHHHHTTccHHHHHHHHTccHHHHHHHHHcGGGccHHHHHHHHHHTTccccccccHHHHHHHHTHHHHTcHHHccTTcccccccccccc############################################################################################################################################################################# DISOP:02AL 265-268| PSIPRED ccHHHHHHHHccccHHHHHHHHcccHHHHHHHHcccccccHHHHHHHHHHHcccHHHHccccccccccccHHHHHHHHHHHHHHHccccccHHHHHHcccccHHHcccEEEEEccccHHHHHHHccccccHHHHHHHHHHHccHHHHHHHccccHHHHHHHHHHHHHccccccHHHEEcccccccHHHHHHHHHHHEEEEEEccccHHEEcccccEEEHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHccccEEccccccc //