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Lactobacillus salivarius UCC118 (lsal0)
Gene : ABE00512.1
DDBJ      :             Glycerophosphodiester phosphodiesterase
Swiss-Prot:             

Homologs  Archaea  1/68 : Bacteria  149/915 : Eukaryota  9/199 : Viruses  0/175   --->[See Alignment]
c.1.18
:604 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   345->568 2pz0B PDBj 6e-14 26.5 %
:RPS:PDB   344->568 3ch0A PDBj 1e-19 20.5 %
:RPS:SCOP  344->579 1zccA1  c.1.18.3 * 8e-31 18.4 %
:HMM:SCOP  343->573 1t8qA_ c.1.18.3 * 2.5e-47 30.9 %
:RPS:PFM   91->216 PF10110 * GPDPase_memb 2e-15 35.7 %
:RPS:PFM   349->563 PF03009 * GDPD 2e-15 32.4 %
:HMM:PFM   89->235 PF10110 * GPDPase_memb 2.2e-49 43.5 147/149  
:HMM:PFM   349->565 PF03009 * GDPD 2.2e-20 27.4 212/255  
:BLT:SWISS 316->578 GDPD1_HUMAN 4e-12 32.2 %
:TM
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID ABE00512.1 GT:GENE ABE00512.1 GT:PRODUCT Glycerophosphodiester phosphodiesterase GT:DATABASE GIB00337CH01 GT:ORG lsal0 GB:ACCESSION GIB00337CH01 GB:LOCATION 1790654..1792468 GB:FROM 1790654 GB:TO 1792468 GB:DIRECTION + GB:PRODUCT Glycerophosphodiester phosphodiesterase GB:NOTE COG0584 [C] Glycerophosphoryl diester phosphodiesterase GB:PROTEIN_ID ABE00512.1 GB:DB_XREF GI:90821873 LENGTH 604 SQ:AASEQ MQQIRSDLQFIDHYINVFKRSWGSYLFFFLGINLFIEAIVIPIFTFLTSWILKLSHIPYVSYTNILEIITHHPVGSFALILELVLIVGVIFFQFTFLLTGITNISRDNFSLKEVWFISWERLIQLRPTSILFFIGYFILIMPFANLIFKTPLLNKAKIPAFIVDFLLAKWQFALLLAVAYLIVFYLGLRLLYTLPLMIIQNYHTREAVSKSFKLTRHQNLANLRRMAVISIYFGAITAVGYLLVLLLQVGFDKLPKPFDLIMAIIMLAIIQIFSTFIATIVSFLLLQMTLPTEVFKGHPTFYHSNRINQRKKKIRITTVILIGFIALLSLTNDYFYLHSNNIPPLRISHRGVDDGNGVQNTIPAMAATIKEHPDFIEMDIHETKDHQFVVMHDENLKNLTGVNKAPYQLTLSQITKLVAHENGHAAHVVSFDDYLAYANKHHQKLLIEVKTTPHDSKDVVDIFLKKYKKNILKHHHEVHSLDYNVVKQIKAKTPKIFVSYILPYNFTYPQTSANAYSMEQSTLNDSFIVDSLFNQQKVYAWTVNTDSEMDRILWLNTDGIITDNLSALDSKINDFYHDPSYADMLFNYITVIPYSNSITSEASV GT:EXON 1|1-604:0| BL:SWS:NREP 1 BL:SWS:REP 316->578|GDPD1_HUMAN|4e-12|32.2|245/314| TM:NTM 7 TM:REGION 27->49| TM:REGION 78->100| TM:REGION 122->144| TM:REGION 178->200| TM:REGION 226->248| TM:REGION 264->286| TM:REGION 315->334| SEG 79->90|lilelvlivgvi| SEG 186->196|lglrllytlpl| SEG 242->247|llvlll| SEG 260->270|limaiimlaii| BL:PDB:NREP 1 BL:PDB:REP 345->568|2pz0B|6e-14|26.5|223/243| RP:PDB:NREP 1 RP:PDB:REP 344->568|3ch0A|1e-19|20.5|224/265| RP:PFM:NREP 2 RP:PFM:REP 91->216|PF10110|2e-15|35.7|126/150|GPDPase_memb| RP:PFM:REP 349->563|PF03009|2e-15|32.4|213/241|GDPD| HM:PFM:NREP 2 HM:PFM:REP 89->235|PF10110|2.2e-49|43.5|147/149|GPDPase_memb| HM:PFM:REP 349->565|PF03009|2.2e-20|27.4|212/255|GDPD| GO:PFM:NREP 2 GO:PFM GO:0006071|"GO:glycerol metabolic process"|PF03009|IPR004129| GO:PFM GO:0008889|"GO:glycerophosphodiester phosphodiesterase activity"|PF03009|IPR004129| RP:SCP:NREP 1 RP:SCP:REP 344->579|1zccA1|8e-31|18.4|228/240|c.1.18.3| HM:SCP:REP 343->573|1t8qA_|2.5e-47|30.9|230/0|c.1.18.3|1/1|PLC-like phosphodiesterases| OP:NHOMO 190 OP:NHOMOORG 159 OP:PATTERN ----1--------------------------------------------------------------- -------------------------------------------------------------------1-1----------1--------------------1--------------------------------------------1-----------------------------------------1--1-2111111111111111-1--11111---1---11111112-1111111111111111111212-22-12-2221122321211111-111---121111111111111111111111111111---1112-2-1-2221211-21-2--111121----1-------------111--1-------------------------------------------------------------------1------1---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1111------1----1------------------------------------------------------------------------------------------------------------------1---------------------------------------------------------------------------------------------------------------------------------------------- -------------------------------------------------------------------------------------------------------------------------1-------241-211--------------------------------------1-------------1---------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 243 STR:RPRED 40.2 SQ:SECSTR #######################################################################################################################################################################################################################################################################################################################################################cEEEETTTTTTTTccTTcHHHHHHHHHHTccEEEEEEEEcTTccEEEcccccccTTTcETTEEccTTTGGGccGGGcTcTTccccccccccHHHHHHHccEEEEEEcccGGcHHHHHHHHHHHHHHTTcGGGEEEEEccHHHHHHHHHcTTcEEEEEEcccccHHHHHTTccccccEEGGccHHHHHHHHHTTEEcccccccHHHHHHHHHHTccEEEEccGGGGHHHHHHHTccccGGGccc################## DISOP:02AL 1-4,599-605| PSIPRED cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHcHHHEEccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEccccccHHHHHHHHHHHHHHHHHHHHHHHHccHHcccccccccEEEEEccccccccccccHHHHHHHHHccccEEEEEEEEccccEEEEEccccHHHHccccccHHHccHHHHHHccccccccccccccHHHHHHHHHHcccEEEEEEcccccccHHHHHHHHHHHHHccccccEEEEEccHHHHHHHHHHcccccEEEEEEcHHHHHHccccEEEccHHcccHHHHHHHHHcccEEEEEEcccHHHHHHHHHccccEEEEccHHHHHHHHHHHHccccHHHHHHHHHHHccccccccccccc //