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Lactobacillus salivarius UCC118 (lsal0)
Gene : ABE00513.1
DDBJ      :             Transcriptional regulator, LacI family
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  524/915 : Eukaryota  4/199 : Viruses  0/175   --->[See Alignment]
a.35.1c.93.1
:330 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   1->51 1pruA PDBj 5e-07 51.0 %
:BLT:PDB   55->306 3ctpA PDBj 6e-27 27.9 %
:RPS:PDB   1->319 1bdhA PDBj 7e-44 25.7 %
:RPS:SCOP  1->52 1bdhA1  a.35.1.5 * 5e-11 48.1 %
:RPS:SCOP  58->319 1rzrA2  c.93.1.1 * 6e-34 22.0 %
:HMM:SCOP  1->54 1efaA1 a.35.1.5 * 2e-11 51.9 %
:HMM:SCOP  54->321 1bykA_ c.93.1.1 * 9.5e-40 27.0 %
:RPS:PFM   1->44 PF00356 * LacI 2e-05 50.0 %
:RPS:PFM   55->300 PF00532 * Peripla_BP_1 5e-16 27.4 %
:HMM:PFM   1->44 PF00356 * LacI 1.6e-14 50.0 44/46  
:HMM:PFM   58->272 PF00532 * Peripla_BP_1 4.7e-10 22.6 208/279  
:BLT:SWISS 1->308 SACR_LACLA 1e-29 28.0 %
:PROS 1->19|PS00356|HTH_LACI_1

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID ABE00513.1 GT:GENE ABE00513.1 GT:PRODUCT Transcriptional regulator, LacI family GT:DATABASE GIB00337CH01 GT:ORG lsal0 GB:ACCESSION GIB00337CH01 GB:LOCATION complement(1792554..1793546) GB:FROM 1792554 GB:TO 1793546 GB:DIRECTION - GB:PRODUCT Transcriptional regulator, LacI family GB:NOTE COG1522 [K] Transcriptional regulators GB:PROTEIN_ID ABE00513.1 GB:DB_XREF GI:90821874 LENGTH 330 SQ:AASEQ MKDVAKDANVSVATVSNYINGKKVRPEVEEQVRQSIEKLHYVRNAAARALKTSESKYVVFVLPTVWSPFFSELTFWVQQYLNDMGYKLILSVSENNYSKEKSYVKMAEEQRVAGIISISYSDLNSHVPANIPLVSIEKDDTGMFPLVTSNNYDGGKIAASEFHKRGVTSAIYAGTLHEEFSPMIARKSGFIDQCNNLGIHYSILDVPSSKNTEDFHKFLNQLSESVKDKEADFGKLGIFAYSDEVAIHIKEKLDEEKIKVPEQVQIIGFDGSKIYPNTKLTVSSIRQDVQQIANKATEILDKQIKGNSEREASRIMVPVNFQQGLTTTSI GT:EXON 1|1-330:0| BL:SWS:NREP 1 BL:SWS:REP 1->308|SACR_LACLA|1e-29|28.0|296/318| PROS 1->19|PS00356|HTH_LACI_1|PDOC00366| BL:PDB:NREP 2 BL:PDB:REP 1->51|1pruA|5e-07|51.0|51/56| BL:PDB:REP 55->306|3ctpA|6e-27|27.9|244/266| RP:PDB:NREP 1 RP:PDB:REP 1->319|1bdhA|7e-44|25.7|311/338| RP:PFM:NREP 2 RP:PFM:REP 1->44|PF00356|2e-05|50.0|44/46|LacI| RP:PFM:REP 55->300|PF00532|5e-16|27.4|237/261|Peripla_BP_1| HM:PFM:NREP 2 HM:PFM:REP 1->44|PF00356|1.6e-14|50.0|44/46|LacI| HM:PFM:REP 58->272|PF00532|4.7e-10|22.6|208/279|Peripla_BP_1| GO:PFM:NREP 3 GO:PFM GO:0003700|"GO:transcription factor activity"|PF00356|IPR000843| GO:PFM GO:0005622|"GO:intracellular"|PF00356|IPR000843| GO:PFM GO:0006355|"GO:regulation of transcription, DNA-dependent"|PF00356|IPR000843| RP:SCP:NREP 2 RP:SCP:REP 1->52|1bdhA1|5e-11|48.1|52/56|a.35.1.5| RP:SCP:REP 58->319|1rzrA2|6e-34|22.0|254/272|c.93.1.1| HM:SCP:REP 1->54|1efaA1|2e-11|51.9|54/59|a.35.1.5|1/1|lambda repressor-like DNA-binding domains| HM:SCP:REP 54->321|1bykA_|9.5e-40|27.0|252/255|c.93.1.1|1/1|Periplasmic binding protein-like I| OP:NHOMO 2255 OP:NHOMOORG 528 OP:PATTERN -------------------------------------------------------------------- 434-9-12445--------------5-------11111232-12276-5441AC8--3--1112634984274446AA2---3-----111--1-----1-6-417-616--------------------------11111---5----------------------1-1-------------12-1-99-7668887887A6997868DBAA6888857A27574666564G43333333333333321255543-54182-3774422433685344666533444455555455555444433454555334522266655316C22222228284411357874-41114--------E1-488861-2--14331-----1-1----------11111111113--------134--744293766A751-4--142-1--422--------2---1--1------------------------------1122-122-1356653211113339212225546121---3342-311116217----1--1----------------1----11-3------------------3-----------------------------8745-45-52531212123111-1131-14-------------89964775556565654-5525555555565664557A99886685565555555455545755555553-866666666655---------------517444446133332335----------243333234712323-545----------656599999A86CD4353434343-------1----------------4-------------------------5565249544--- -------------1------------------------------------------------------------------------------------------------------------------------------------------------------------2--------------1--------2---- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 330 STR:RPRED 100.0 SQ:SECSTR HHHHHHHHTccHHHHHHHHHTccccHHHHHHHHHHHHHHTccccHHHHHHHHTcccEEEEEEcccccHHHHHHHHHHHHHHHHTTcEEEEEEcTTcHHHHHHHHHHHHHTTccEEEEEccccccHHHHTTccEEEcccccccccEEEEccHHHHHHHHHHHHHHTTcccEEEEEcccTTcHHHHHHHHHHHHHHHHTTccccGGGcccccccHHHHHHHHHHHHcTccccccccEEEEEEccHHHHHHHHHHHHHTTccTTTTcEEEEEEccTTGGGccccccEEEccHHHHHHHHHHHHHHHHHTcccccccEEEcccEEEcccccccE DISOP:02AL 47-51,327-331| PSIPRED cHHHHHHHcccHHHHHHHHccccccHHHHHHHHHHHHHHcccccHHHHHHHcccccEEEEEEcccccHHHHHHHHHHHHHHHHcccEEEEEEccccHHHHHHHHHHHHHccccEEEEccHHHHHHHHHccccEEEEcccccccccEEEEcHHHHHHHHHHHHHHccccEEEEEccccccccHHHHHHHHHHHHHHHccccccEEEEcccccHHHHHHHHHHHHHHHHHccccccccEEEEccHHHHHHHHHHHHHcccccccEEEEEEEccHHHHHHccccccEEEccHHHHHHHHHHHHHHHHHccccccccEEEEccEEEEccccccc //