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Lactobacillus salivarius UCC118 (lsal0)
Gene : amyB
DDBJ      :amyB         Neopullulanase / Cyclomaltodextrinase / Maltogenic alpha-amylase
Swiss-Prot:             

Homologs  Archaea  15/68 : Bacteria  527/915 : Eukaryota  112/199 : Viruses  0/175   --->[See Alignment]
b.1.18b.71.1c.1.8
:581 amino acids
:SECSTR
:PSIPRED
:BLT:PDB   1->578 1smaA PDBj 8e-72 31.0 %
:RPS:PDB   1->553 1bvzA PDBj 3e-53 25.7 %
:RPS:SCOP  1->110 1bvzA1  b.1.18.2 * 5e-16 19.4 %
:RPS:SCOP  127->505 1bvzA3  c.1.8.1 * 1e-42 29.1 %
:RPS:SCOP  512->581 1wzaA1  b.71.1.1 * 4e-06 25.0 %
:HMM:SCOP  1->136 1gviA1 b.1.18.2 * 8.1e-27 31.7 %
:HMM:SCOP  128->512 1ea9C3 c.1.8.1 * 8.9e-68 29.1 %
:HMM:SCOP  512->580 1smaA2 b.71.1.1 * 0.00048 17.4 %
:RPS:PFM   1->102 PF02903 * Alpha-amylase_N 1e-09 35.1 %
:RPS:PFM   178->467 PF00128 * Alpha-amylase 3e-17 26.1 %
:HMM:PFM   170->474 PF00128 * Alpha-amylase 1.1e-44 27.8 302/316  
:HMM:PFM   1->103 PF02903 * Alpha-amylase_N 1.8e-22 32.7 101/120  
:HMM:PFM   530->580 PF08533 * Glyco_hydro_42C 0.00024 21.6 51/58  
:BLT:SWISS 1->570 BBMA1_BACSU 1e-88 33.2 %

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID ABD98888.1 GT:GENE amyB GT:PRODUCT Neopullulanase / Cyclomaltodextrinase / Maltogenic alpha-amylase GT:DATABASE GIB00337CH01 GT:ORG lsal0 GB:ACCESSION GIB00337CH01 GB:LOCATION 84450..86195 GB:FROM 84450 GB:TO 86195 GB:DIRECTION + GB:GENE amyB GB:PRODUCT Neopullulanase / Cyclomaltodextrinase / Maltogenic alpha-amylase GB:NOTE COG0366 [G] Glycosidases GB:PROTEIN_ID ABD98888.1 GB:DB_XREF GI:90820249 GB:GENE:GENE amyB LENGTH 581 SQ:AASEQ MNKAAILHIPASEMAYYENKDELHLQLQSAHNDLADVTVLVGEVSGNNNDSWRYESFFMQKTFATRYHDYWEVILKLNKNEAQYVFKVTDTYGNVGLYDAQRLCEATEENANSPHGFIIENRDMRQVTQIPDWVTKTVWYQIQIDRFANGNDNLAKLSENEDNTTQILGGDLTGILSKLDYLQNLGINGIVLSSIFEGDGPFKLTTNDFYSIDSQFGNKDLFKMLVSNLHRRNMKVVLKMNLAYLSDNSRQWREILEEGQHAKYVDWFNIKGFPPKYSQDPHNKNIVRANYKFSELNPHYPTLNLKNPEVQTYLIQAIKYWVEHFEIDGLILDHADKLSREFVHLLNRNLKKMKSNFYLVGKSEMSNTSVVQLGDFDAMTDDVLGNLLLNFARDKKIAASEFKYQLSRQMLAQNTKLSRVTLRTLDDLTSSRILTRCRENKALMRSLLTFMYLLKGSPAITYGTELGLSGHDFPSNLAGMDWNQEDQDDKMMRFIKVLNTFRLQNYKILSEGSFEWGQISDSYDYVSFIRRKDKRRLFALFNFGYNGIKFVLPKHAKLILGQNIVDEKSEIGQYGFVILEA GT:EXON 1|1-581:0| BL:SWS:NREP 1 BL:SWS:REP 1->570|BBMA1_BACSU|1e-88|33.2|554/588| BL:PDB:NREP 1 BL:PDB:REP 1->578|1smaA|8e-72|31.0|562/588| RP:PDB:NREP 1 RP:PDB:REP 1->553|1bvzA|3e-53|25.7|538/585| RP:PFM:NREP 2 RP:PFM:REP 1->102|PF02903|1e-09|35.1|97/116|Alpha-amylase_N| RP:PFM:REP 178->467|PF00128|3e-17|26.1|280/296|Alpha-amylase| HM:PFM:NREP 3 HM:PFM:REP 170->474|PF00128|1.1e-44|27.8|302/316|Alpha-amylase| HM:PFM:REP 1->103|PF02903|1.8e-22|32.7|101/120|Alpha-amylase_N| HM:PFM:REP 530->580|PF08533|0.00024|21.6|51/58|Glyco_hydro_42C| GO:PFM:NREP 5 GO:PFM GO:0004553|"GO:hydrolase activity, hydrolyzing O-glycosyl compounds"|PF02903|IPR004185| GO:PFM GO:0005975|"GO:carbohydrate metabolic process"|PF02903|IPR004185| GO:PFM GO:0003824|"GO:catalytic activity"|PF00128|IPR006047| GO:PFM GO:0005975|"GO:carbohydrate metabolic process"|PF00128|IPR006047| GO:PFM GO:0043169|"GO:cation binding"|PF00128|IPR006047| RP:SCP:NREP 3 RP:SCP:REP 1->110|1bvzA1|5e-16|19.4|108/120|b.1.18.2| RP:SCP:REP 127->505|1bvzA3|1e-42|29.1|371/382|c.1.8.1| RP:SCP:REP 512->581|1wzaA1|4e-06|25.0|68/79|b.71.1.1| HM:SCP:REP 1->136|1gviA1|8.1e-27|31.7|123/0|b.1.18.2|1/1|E set domains| HM:SCP:REP 128->512|1ea9C3|8.9e-68|29.1|374/0|c.1.8.1|1/1|(Trans)glycosidases| HM:SCP:REP 512->580|1smaA2|0.00048|17.4|69/0|b.71.1.1|1/1|Glycosyl hydrolase domain| OP:NHOMO 1358 OP:NHOMOORG 654 OP:PATTERN --1-1-----------1-------2--2111------------------------1-222-111---- 24-11-21111----1111-1---22111112-111--11111111-121113131-1----1-31-32113211121---11-----1111-4-----212-113-32----------------1111111111145444---62255111-11--222211-1-33341-1-----1----5422312-27-4444455444445542333144445541254332332-332222222222222211132352-36-142566222414-321455---22221---1111211-1-2----2222----111---111121-15111----6-6-422-4435-13--16-111-1--51-133231-3--11111------132111-21221------------21311322121-1223342234221122122-222211---------------1-------------------------------11-1--1-1-111-111111111121-111-111---------3--------2----1--1-----------12--1----1-1-------111-11--12212211----------------------------2131-21--332211222-122-21-2--2---1---------33--2312222232322-22222223222322222232321-11-21-222222212222132212221--222222222222-------------1-413---132-------------------2811211---2-1-13111----------233322222244551122222-11-------1221111--------1-3--------1-2---------1----465124141512- --11221-------1331-65465652222222---11---111212211234224311333-11----1--1-4------11-1124-41332531-21----------211-1-------11111--591-1141--11--1-11---1-11-11112-6-53-2357511-1---2B-------1-1----1---- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 581 STR:RPRED 100.0 SQ:SECSTR ccGGGccccccTTTEEEEETTEEEEEEEEETTcccEEEEEEEcccTTccTTcccEEEEEEEEEEcccEEEEEEEEEcTTccEEEEEEEEcccccEcEEEETTEEEccHHHHccEEEcccccTTccccccccGGGGGccEEEEcHHHHccccTTcccTTcccccTTccccccHHHHHHHHHHHHHHTccEEEEcccccccccccccccccccccTTTccHHHHHHHHHHHHTTTccEEEEEcTTcccTTcHHHHHHHHHGGGcTTGGGccccccccccccccccccccccccccccccTTcccccTTcHHHHHHHHHHHHHHHHHHTccEEEETTGGGccHHHHHHHHHHHHHHcTTcEEEEccccccTTTTTTTcccEEEEHHHHHHHHHHHTTccccHHHHHHHHHHHHTTccHHHHTTcEEEcccTTcccHHHHTTTcHHHHHHHHHHHTTcccEEEEETTGGGTcccccTTTTcccccccGGGccHHHHHHHHHHHHHHHHHcTHHHHcEEEEEEEETTTTEEEEEEEETTEEEEEEEEcccccEEEEEEGGHHHHTTccEcccEEEEcTTcEEEEEE PSIPRED ccccccccccccccEEEEcccEEEEEEEEccccccEEEEEEEEccccccccccEEEEEEEEEcccccccEEEEEEccccccEEEEEEEEcccccEEEccccccccccccccccccccEEccccHHccccccHHHHccEEEEEEccccccccccccccccccccccccccccHHHHHHHHHHHHHccccEEEEccccccccccccccccccccccccccHHHHHHHHHHHHHcccEEEEEEcccccccccHHHHHHHccccccccccccccccccccccccccccccccccEEcccccccccccccccHHHHHHHHHHHHHHHHHccccEEEEcccccccHHHHHHHHHHHHHHcccEEEEEEEcccccccccccccccccccHHHHHHHHHHHcccccHHHHHHHHHHHHHccccccccEEEEEccccccHHHHHHccccHHHHHHHHHHHHHccccEEEEccEEccccccccccccccccccccccccHHHHHHHHHHHHHHHccHHHccccEEEEEEcccccEEEEEEEEccEEEEEEEEcccccEEEEEcccccEEEcccccccEEEEccccEEEEEc //