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Lactobacillus salivarius UCC118 (lsal0)
Gene : aspS
DDBJ      :aspS         Aspartyl-tRNA synthetase
Swiss-Prot:SYD_LACS1    RecName: Full=Aspartyl-tRNA synthetase;         EC=6.1.1.12;AltName: Full=Aspartate--tRNA ligase;         Short=AspRS;

Homologs  Archaea  68/68 : Bacteria  909/915 : Eukaryota  193/199 : Viruses  0/175   --->[See Alignment]
b.122.1b.40.4d.104.1
:590 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   3->582 1eqrA PDBj e-154 49.6 %
:RPS:PDB   3->582 1c0aA PDBj 1e-87 46.6 %
:RPS:SCOP  3->107 1c0aA1  b.40.4.1 * 3e-25 50.0 %
:RPS:SCOP  136->300 1c0aA3  d.104.1.1 * 5e-32 59.1 %
:RPS:SCOP  318->474 1jhdA1  b.122.1.3 * 8e-42 10.9 %
:RPS:SCOP  466->561 11asA  d.104.1.1 * 1e-18 25.0 %
:HMM:SCOP  2->108 1c0aA1 b.40.4.1 * 7.5e-34 44.3 %
:HMM:SCOP  109->585 1c0aA3 d.104.1.1 * 3.1e-110 36.9 %
:RPS:PFM   25->103 PF01336 * tRNA_anti 2e-09 48.5 %
:RPS:PFM   137->312 PF00152 * tRNA-synt_2 3e-50 55.3 %
:RPS:PFM   312->405 PF02938 * GAD 3e-24 59.6 %
:RPS:PFM   378->556 PF00152 * tRNA-synt_2 7e-30 40.8 %
:HMM:PFM   122->558 PF00152 * tRNA-synt_2 8e-129 57.1 312/323  
:HMM:PFM   19->104 PF01336 * tRNA_anti 1.1e-17 39.2 74/76  
:BLT:SWISS 1->590 SYD_LACS1 0.0 100.0 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID ABD99663.1 GT:GENE aspS GT:PRODUCT Aspartyl-tRNA synthetase GT:DATABASE GIB00337CH01 GT:ORG lsal0 GB:ACCESSION GIB00337CH01 GB:LOCATION 872279..874051 GB:FROM 872279 GB:TO 874051 GB:DIRECTION + GB:GENE aspS GB:PRODUCT Aspartyl-tRNA synthetase GB:NOTE COG0173 [J] Aspartyl-tRNA synthetase GB:PROTEIN_ID ABD99663.1 GB:DB_XREF GI:90821024 GB:GENE:GENE aspS LENGTH 590 SQ:AASEQ MRRTTYAGLVDEKYLDQEVCLKGWVQKRRNLGNLIFVDLRDIEGIVQLVFSQEFNPEALKVAEQLRSEYVIEVKGKVVARGEKAINPNMRTGKVEVEVSDIEILNKAKTTPFDIADDINASDDLRLQYRYLDLRRPEMQKALMIRNRITQTVHSYLDENHFLDIETPYLTRSTPEGARDYLVPSRVYPGHFYALPQSPQLFKQLLMGAGYDRYYQIARCFRDEDLRGDRQPEFTQIDIETSFMSAEEIQEMTEGLLKRVMKETLDVDIKTPIQRITWNEAMDRFGSDKPDIRFGMELKDMSGAVRNAGFKVFDMTLENGGQVKAITVPGGADKYSRKQIEEKQEYIKRFGAKGLAWVKVTDDGLTGPIAKFFTERAEDIKEAAEAKSGDLILFVASNRKVVADSLGYLRVAIAKEMDMINKDEFAFIWVVDWPLFEYSEEFDRYIAAHHPFTMPNEEDLDLLETDPHKCHAQSYDIVLNGYELGGGSIRIHRRDIQEAMFKALGFTKEKAEEQFGWFMDALDFGFPPHGGLALGLDRFAMLLAGKDNIREVIAFPKNSKASEPLTHAPSTVAPKQLDELYLKTDVPEEDE GT:EXON 1|1-590:0| SW:ID SYD_LACS1 SW:DE RecName: Full=Aspartyl-tRNA synthetase; EC=6.1.1.12;AltName: Full=Aspartate--tRNA ligase; Short=AspRS; SW:GN Name=aspS; OrderedLocusNames=LSL_0853; SW:KW Aminoacyl-tRNA synthetase; ATP-binding; Complete proteome; Cytoplasm;Ligase; Nucleotide-binding; Protein biosynthesis. SW:EXACT T SW:FUNC + BL:SWS:NREP 1 BL:SWS:REP 1->590|SYD_LACS1|0.0|100.0|590/590| GO:SWS:NREP 6 GO:SWS GO:0004812|"GO:aminoacyl-tRNA ligase activity"|Aminoacyl-tRNA synthetase| GO:SWS GO:0005524|"GO:ATP binding"|ATP-binding| GO:SWS GO:0005737|"GO:cytoplasm"|Cytoplasm| GO:SWS GO:0016874|"GO:ligase activity"|Ligase| GO:SWS GO:0000166|"GO:nucleotide binding"|Nucleotide-binding| GO:SWS GO:0006412|"GO:translation"|Protein biosynthesis| SEG 122->135|ddlrlqyryldlrr| BL:PDB:NREP 1 BL:PDB:REP 3->582|1eqrA|e-154|49.6|573/590| RP:PDB:NREP 1 RP:PDB:REP 3->582|1c0aA|1e-87|46.6|575/585| RP:PFM:NREP 4 RP:PFM:REP 25->103|PF01336|2e-09|48.5|66/74|tRNA_anti| RP:PFM:REP 137->312|PF00152|3e-50|55.3|170/337|tRNA-synt_2| RP:PFM:REP 312->405|PF02938|3e-24|59.6|94/96|GAD| RP:PFM:REP 378->556|PF00152|7e-30|40.8|151/337|tRNA-synt_2| HM:PFM:NREP 2 HM:PFM:REP 122->558|PF00152|8e-129|57.1|312/323|tRNA-synt_2| HM:PFM:REP 19->104|PF01336|1.1e-17|39.2|74/76|tRNA_anti| GO:PFM:NREP 17 GO:PFM GO:0003676|"GO:nucleic acid binding"|PF01336|IPR004365| GO:PFM GO:0000166|"GO:nucleotide binding"|PF00152|IPR004364| GO:PFM GO:0004812|"GO:aminoacyl-tRNA ligase activity"|PF00152|IPR004364| GO:PFM GO:0005524|"GO:ATP binding"|PF00152|IPR004364| GO:PFM GO:0005737|"GO:cytoplasm"|PF00152|IPR004364| GO:PFM GO:0006412|"GO:translation"|PF00152|IPR004364| GO:PFM GO:0006418|"GO:tRNA aminoacylation for protein translation"|PF00152|IPR004364| GO:PFM GO:0004812|"GO:aminoacyl-tRNA ligase activity"|PF02938|IPR004115| GO:PFM GO:0005524|"GO:ATP binding"|PF02938|IPR004115| GO:PFM GO:0005737|"GO:cytoplasm"|PF02938|IPR004115| GO:PFM GO:0006412|"GO:translation"|PF02938|IPR004115| GO:PFM GO:0000166|"GO:nucleotide binding"|PF00152|IPR004364| GO:PFM GO:0004812|"GO:aminoacyl-tRNA ligase activity"|PF00152|IPR004364| GO:PFM GO:0005524|"GO:ATP binding"|PF00152|IPR004364| GO:PFM GO:0005737|"GO:cytoplasm"|PF00152|IPR004364| GO:PFM GO:0006412|"GO:translation"|PF00152|IPR004364| GO:PFM GO:0006418|"GO:tRNA aminoacylation for protein translation"|PF00152|IPR004364| RP:SCP:NREP 4 RP:SCP:REP 3->107|1c0aA1|3e-25|50.0|104/106|b.40.4.1| RP:SCP:REP 136->300|1c0aA3|5e-32|59.1|164/346|d.104.1.1| RP:SCP:REP 318->474|1jhdA1|8e-42|10.9|156/173|b.122.1.3| RP:SCP:REP 466->561|11asA|1e-18|25.0|96/328|d.104.1.1| HM:SCP:REP 2->108|1c0aA1|7.5e-34|44.3|106/0|b.40.4.1|1/1|Nucleic acid-binding proteins| HM:SCP:REP 109->585|1c0aA3|3.1e-110|36.9|347/0|d.104.1.1|1/1|Class II aaRS and biotin synthetases|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p4223244592634353323 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 582 STR:RPRED 98.6 SQ:SECSTR cHccccGGGccGGGTTcEEEEEEEEEEEEEccccEEEEEEETTEEEEEEEcGGcGHHHHHHHTTccTTcEEEEEEEEEEccTTTccTTcTTTTEEEEEEEEEEEEccccccccTTccccHEEHHHHHTHHHHTTcHHHHHHHHHHHHHHHHHHHHHHHTTcEEcccccccccccccccccEEEccccTTcEEEcccccHHHHHHHHHTTccEEEEEEEEEccccccTTcccEEEEEEEEEEcccHHHHHHHHHHHHHHHHHHHHcccccHcccEEEHHHHHHHHccccccTTccccEEEcHHHHTTcccHHHHHHHHcTTEEEEEEEETTGGGccHHHHHHHHHHHHHTTcccccEEEEccGEEcTTGGGccHHHHHHHHHHTTccTTcEEEEEEEEHHHHHHHHHHHHHHHHHHTTccccccccEEEEEcccEcEEEcccccEEEcccTTcccccccHHHHHHccTTccccEEEEEETTEEEEEEEEccccHHHHHHHHHHTTccHHHHHHHHHHHHHHTTTTcccEEEEEEEHHHHHHHHHTcccGGGGccccccTTcccTTTTccccccHHHHHHTTcc######## DISOP:02AL 569-570,582-591| PSIPRED ccccccHHHccHHHcccEEEEEEEEEEEcccccEEEEEEEcccEEEEEEEEccccHHHHHHHHccccccEEEEEEEEEEcccccccccccccEEEEEEEEEEEEEccccccccHHHcccccccEEEEEEEEcccHHHHHHHHHHHHHHHHHHHHHHHHcccEEEcccccccccccccccEEEEcccccccEEcccccHHHHHHHHHHcccccEEEEEEEEEcccccccccccEEEEEEEcccccHHHHHHHHHHHHHHHHHHHHcccccccEEEEEHHHHHHHHccccccccccHHHHHHHHHHHHcccHHHHHHHccccEEEEEEEcccccccccHHHccHHHHHHHcccccccEEEEccccEEEcHHHcHHHHHHHHHHHHccccccEEEEEcccHHHHHHHccHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccHHHHHccccccEEEEEEEEEccEEEEcccEEcccHHHHHHHHHHHcccHHHHHHHHHHHHHHHHcccccccEEEEcHHHHHHHHHccccHHHEEccccccccccccccccccccHHHHHHcccccccccccc //